View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_high_2 (Length: 491)
Name: NF15535_high_2
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Complemental strand, 11922429 - 11921969
Alignment:
| Q |
11 |
cacagaatacaagtctgcagattctagaaaagaaacaaagaaattcacaccaatatgatgcgaaaatcacaaagatgaagaagaaatagtatgtatttta |
110 |
Q |
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| T |
11922429 |
cacagaatacaagtctgcagattctagaaaagaaacaaagaaattcacaccaatatgatgcgaaaatcacaaagatgaagaagaaatagtatgtatttta |
11922330 |
T |
|
| Q |
111 |
cgaataagaactcaattcgagaaaagcgaagaaaagaatgattgacttagaattcaatcaaacnnnnnnnnncatattaacaagataaaaaatgagaatc |
210 |
Q |
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| T |
11922329 |
cgaataagaactcaattcgagaaaagcgaagaaaagaatgattgacttagaattcaatcaaacaaaaaaaaacatattaacaagataaaaaatgagaatc |
11922230 |
T |
|
| Q |
211 |
agattgcagaatctgcaatcaaatgcaaagaatcttgaagaaaacgatcgaagaagatgatcaaagagaaatgcatagcggaaaaacgattagaacgaaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11922229 |
agattgcagaatctgcaatcaaatgcaaagaatcttgaagaaaacgatcgaagaagatgatcaaagagaaatgcatagcagaaaaacgattagaacgaaa |
11922130 |
T |
|
| Q |
311 |
cggttggggattgtaacaacctttctcgagatggaaaaggcacgtgataccatattatgaaacttgagaaatgaatgaaaagggattattctcattgatg |
410 |
Q |
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| T |
11922129 |
cggttggggattgtaacaacctttctcgagatggaaaaggcacgtgataccatattatgaaacttgagaaatgaatgaaaagggattattctcattgatg |
11922030 |
T |
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| Q |
411 |
aacagttgttacaagtatatacatcgaaatgtatgtgtacattaagctatcatgtgctata |
471 |
Q |
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| T |
11922029 |
aacagttgttacaagtatatacatcgaaatgtatgtgtacattaagctatcatgtgctata |
11921969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 28669374 - 28669455
Alignment:
| Q |
308 |
aaacggttggggattgtaacaacctttctcgagatggaaaaggcacgtgataccatattatgaaacttgagaaatgaatgaa |
389 |
Q |
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| T |
28669374 |
aaacggttatggatagtaacaatctttcacgcaagggaaaaggttcttgataccatattaggaaacttgagaaatgaatgaa |
28669455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 28669105 - 28669198
Alignment:
| Q |
40 |
aagaaacaaagaaattcacaccaatatgatgcgaaaatcacaaagatgaagaagaaatagtatgtattttacgaataagaactcaattcgagaaaa |
135 |
Q |
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| T |
28669105 |
aagaaacgaagaaattcacacctgtatgatgcgaaaat--cagagatgaagaagaaagggaacgaattatagtaataagaactgaattcgagaaaa |
28669198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 28669257 - 28669311
Alignment:
| Q |
198 |
aaaaatgagaatcagattgcagaatctgcaatc-aaatgcaaagaatcttgaaga |
251 |
Q |
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| T |
28669257 |
aaaaacgagaatcaagttgcagaatctgcaatcaaaatgcaaagaatcatgaaga |
28669311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 28669330 - 28669378
Alignment:
| Q |
250 |
gaaaacgatcgaagaagatgatcaaagagaaatgcatagcggaaaaacg |
298 |
Q |
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| T |
28669330 |
gaaaacgattgaagaagatgatcaaagaggaatacacaacggaaaaacg |
28669378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 25633125 - 25633168
Alignment:
| Q |
51 |
aaattcacaccaatatgatgcgaaaatcacaaagatgaagaagaa |
95 |
Q |
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| T |
25633125 |
aaattcacaccaatacgatgtgaaaatcacaaag-tgaagaagaa |
25633168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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