View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15535_high_20 (Length: 201)
Name: NF15535_high_20
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_high_20 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 40890926 - 40891121
Alignment:
| Q |
1 |
aaaggttcatgaataattttatccctaatatgtaaatctttgatctgagtatgcaaccttttccacaagcatccttcgaaatctaaattataacatccaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40890926 |
aaaggttcgtgaataattttatccctaatat--aaatctttgatctgagtatgcaaccttttccacaagcttccttcgaaatctaaattataacatccaa |
40891023 |
T |
|
| Q |
101 |
aaatgtcaagagactcaagacgagggcatccatcaagaatagcaagcaagccaacatcactgagagggtctccatgaagaagaagatggagtagccca |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40891024 |
aaatgtcaagagactcaagacgagggcatccatcaagaatagcaagcaagccaacatcactgagagggtctccatgaagaacaagatggagtagccca |
40891121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 30621424 - 30621591
Alignment:
| Q |
34 |
aaatctttgatctgagtatgcaaccttttccacaagcatccttcgaaatctaaattataacatccaaaaatgtcaagagactcaagacgagggcatccat |
133 |
Q |
| |
|
|||| |||||||||| || ||||||||| || |||| ||| | |||||||| |||||||||||| | |||||| ||||| |||||| |||||||||||| |
|
|
| T |
30621424 |
aaatgtttgatctgattacgcaacctttcccccaagtttccattgaaatctagattataacatcctataatgtcgagagattcaagaagagggcatccat |
30621523 |
T |
|
| Q |
134 |
caagaatagcaagcaagccaacatcactgagagggtctccatgaagaagaagatggagtagcccaggc |
201 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| |||||||| | ||||||| ||||||||||| |
|
|
| T |
30621524 |
caagaatagcaagcaacccaacttcactgagagggtttccatgaatatcaagatggcgtagcccaggc |
30621591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 12570380 - 12570339
Alignment:
| Q |
108 |
aagagactcaagacgagggcatccatcaagaatagcaagcaa |
149 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12570380 |
aagagattcaagacgaggacatccatcaagaatagcaagcaa |
12570339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 13546844 - 13546803
Alignment:
| Q |
108 |
aagagactcaagacgagggcatccatcaagaatagcaagcaa |
149 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13546844 |
aagagattcaagacgaggacatccatcaagaatagcaagcaa |
13546803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 38285846 - 38285699
Alignment:
| Q |
22 |
tccctaatatgtaaatctttgatctgagtatgcaaccttttccacaagcatccttcgaaatctaaattataacatccaaaaatgtcaagagactcaagac |
121 |
Q |
| |
|
||||||| ||| ||||||||||| ||| ||||||| || | |||||||| ||| |||||||| | |||||||||||| ||||| |||||| |||||| |
|
|
| T |
38285846 |
tccctaagatgcaaatctttgatatgattatgcaatctctcccacaagcttccatcgaaatccagattataacatcctgcaatgttaagagattcaagaa |
38285747 |
T |
|
| Q |
122 |
gagggcatccatcaagaatagcaagcaagccaacatcactgagagggt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
38285746 |
gagggcatccatcaagaatagcaagcaacccatcatcagtgagagggt |
38285699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University