View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_high_6 (Length: 335)
Name: NF15535_high_6
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 7962648 - 7962962
Alignment:
| Q |
1 |
aaatataattatttattaaaaatcacact-aataatgctactatccttcttccaatccccatatcgtcgtaaacacacacctaacccacaaatattagac |
99 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7962648 |
aaatatgattatttattaaaaatcacacttaataatgctactatccttcttccaatccccatatcgt---aaacacacacctaacccacaaatattagac |
7962744 |
T |
|
| Q |
100 |
tgacagcaagacaaagacaggtagcttagcttaatctttgtaacactaactaacaaaagtgttaacttcttttctgtctttgtgttctgtttatgagtta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7962745 |
tgacagcaagacaaagacaggtagcttagcttaatctttgtaacactaactaacaaaagtgttaacttcttttctgtctttgtgttctgtttttgagtta |
7962844 |
T |
|
| Q |
200 |
ttgggtggaaagtgttacaaaacatggagcaacttaagctaacactttcacttttcttctccttctccgattcatcttcatggtttcaccgtgattccac |
299 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7962845 |
ttgggtggaaactgttacaaaacatggagcaacttaagctaacactttcacttttcttctccttctccgattcatcttcatggtttcaccgtgattccac |
7962944 |
T |
|
| Q |
300 |
tcactccccacttttcta |
317 |
Q |
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||| |||||||||||||| |
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| T |
7962945 |
tcattccccacttttcta |
7962962 |
T |
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