View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15535_high_7 (Length: 289)

Name: NF15535_high_7
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15535_high_7
NF15535_high_7
[»] chr5 (2 HSPs)
chr5 (17-192)||(43254736-43254909)
chr5 (18-152)||(22668890-22669022)
[»] scaffold0884 (1 HSPs)
scaffold0884 (18-152)||(852-986)
[»] chr8 (1 HSPs)
chr8 (18-152)||(18621262-18621396)
[»] chr7 (3 HSPs)
chr7 (18-152)||(11896363-11896497)
chr7 (25-150)||(22793002-22793127)
chr7 (25-150)||(25001874-25001999)
[»] chr3 (2 HSPs)
chr3 (17-126)||(27429663-27429772)
chr3 (17-100)||(49722982-49723065)
[»] chr6 (1 HSPs)
chr6 (17-150)||(4928609-4928742)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 43254736 - 43254909
Alignment:
Q  17 tcatcacgcacatttcgactacacatggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaagttagtgaacctagatt 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  43254736 tcatcacgcacatttcgactacacatggtctcagatttgttcactttgtcgc--tggacaaaaatcagttgataaatggcaaagttagtgaacctagatt 43254833  T
Q  117 catcctcatataggccaacaaaccttgtgtgatacctacgacccaaactccatttaggcaacggcttaaaactaac 192  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  43254834 catcctcatataggccaacaaaccttgtgtgatacctacgatccaaactccatttaggcaacggcataaaactaac 43254909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 22668890 - 22669022
Alignment:
Q  18 catcacgcacatttcgactacacat-ggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaagttagtgaacctagatt 116  Q
    |||||||| |||||| ||||||| | |||||||||||||||||||||||||  |||||||||||||| |||||    ||||||| ||||||| || ||||    
T  22668890 catcacgcccatttctactacactttggtctcggatttgttcactttgtcatgctggacaaaaatcaattgat---gggcaaaggtagtgaaactggatt 22668986  T
Q  117 catcctcatataggccaacaaaccttgtgtgatacc 152  Q
    ||| |||||| ||||||| ||| |||||||||||||    
T  22668987 cattctcatagaggccaataaagcttgtgtgatacc 22669022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 852 - 986
Alignment:
Q  18 catcacgcacatttcgactacacatggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaagttagtgaacctagattc 117  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||| ||  |||||| ||||||| || |||||    
T  852 catcacgcccatttcgactacacttggtctcggatttgttcactttgtcatgctggacaaaaatcaattgatgaagtgcaaaggtagtgaaactggattc 951  T
Q  118 atcctcatataggccaacaaaccttgtgtgatacc 152  Q
    || | |||| ||||||| ||| |||||||||||||    
T  952 attcccatagaggccaataaagcttgtgtgatacc 986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 18621396 - 18621262
Alignment:
Q  18 catcacgcacatttcgactacacatggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaagttagtgaacctagattc 117  Q
    |||||||| |||||||||||||| |||||||||| || ||||||||||||  |||||||||||  | |||||||| ||||||| |||||||||| |||||    
T  18621396 catcacgctcatttcgactacacttggtctcggaatttttcactttgtcattctggacaaaaaataattgataaagggcaaaggtagtgaacctggattc 18621297  T
Q  118 atcctcatataggccaacaaaccttgtgtgatacc 152  Q
    ||||||||| ||| ||| ||| |||||||||||||    
T  18621296 atcctcatagaggacaataaagcttgtgtgatacc 18621262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 11896497 - 11896363
Alignment:
Q  18 catcacgcacatttcgactacacatggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaagttagtgaacctagattc 117  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||||  ||||||||||| || |||||||| || |||| ||||||| || |||||    
T  11896497 catcacgcccatttcgactacacttggtctcgaatttgttcactttgtcatgctggacaaaaaacaattgataaagggaaaaggtagtgaaactggattc 11896398  T
Q  118 atcctcatataggccaacaaaccttgtgtgatacc 152  Q
    || |||||| ||||||| ||| |||||||||||||    
T  11896397 attctcatagaggccaataaagcttgtgtgatacc 11896363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 22793002 - 22793127
Alignment:
Q  25 cacatttcgactacacatggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaagttagtgaacctagattcatcctca 124  Q
    ||||||||||||| |  ||||||||||||| |||||| |||||| ||||||| |||||||  |||||| |||||||    ||||||| ||||||||||||    
T  22793002 cacatttcgactatatttggtctcggattttttcactctgtcactctggacagaaatcagccgataaaaggcaaaggggttgaacctggattcatcctca 22793101  T
Q  125 tataggccaacaaaccttgtgtgata 150  Q
    || | | ||||||| ||||| |||||    
T  22793102 taaaaggcaacaaaacttgtatgata 22793127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 25001874 - 25001999
Alignment:
Q  25 cacatttcgactacacatggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaagttagtgaacctagattcatcctca 124  Q
    ||||||||||||| |  ||||||||||||| ||||||||||||| |||||||  |||||   |||||| |||||||    |||| || ||||||||||||    
T  25001874 cacatttcgactatatttggtctcggattttttcactttgtcactctggacaggaatcaaccgataaaaggcaaaggggttgaatctggattcatcctca 25001973  T
Q  125 tataggccaacaaaccttgtgtgata 150  Q
    || | | ||||||| |||||||||||    
T  25001974 taaatggcaacaaaacttgtgtgata 25001999  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 27429772 - 27429663
Alignment:
Q  17 tcatcacgcacatttcgactacacatggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaagttagtgaacctagatt 116  Q
    ||||||||||||||||||||| |  ||||||||||||| ||||||||||||| ||||||| |||||||  |||||| |||||||    ||||||| ||||    
T  27429772 tcatcacgcacatttcgactatatttggtctcggattttttcactttgtcactctggacagaaatcagccgataaaaggcaaaggggttgaacctggatt 27429673  T
Q  117 catcctcata 126  Q
    ||||||||||    
T  27429672 catcctcata 27429663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 49723065 - 49722982
Alignment:
Q  17 tcatcacgcacatttcgactacacatggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaag 100  Q
    ||||||||| | ||| ||||| || |||||||||||||||||||||| |||  ||||||||||||||||||||||| |||||||    
T  49723065 tcatcacgcgcgttttgactaaacttggtctcggatttgttcactttatcatgctggacaaaaatcagttgataaaaggcaaag 49722982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 4928609 - 4928742
Alignment:
Q  17 tcatcacgcacatttcgactacacatggtctcggatttgttcactttgtcacactggacaaaaatcagttgataaatggcaaagttagtgaacctagatt 116  Q
    ||||||||||||||||||||| |  ||||||| ||||| |||||||||  || || |||| |||||||  |||||| |||||||    ||||||| ||||    
T  4928609 tcatcacgcacatttcgactatatttggtctcagattttttcactttgagactctagacagaaatcagccgataaaaggcaaaggggttgaacctggatt 4928708  T
Q  117 catcctcatataggccaacaaaccttgtgtgata 150  Q
    |||||||||| | | ||||||| |||||||||||    
T  4928709 catcctcataaaaggcaacaaaacttgtgtgata 4928742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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