View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15535_low_1 (Length: 815)

Name: NF15535_low_1
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15535_low_1
NF15535_low_1
[»] chr4 (3 HSPs)
chr4 (34-302)||(37876181-37876454)
chr4 (626-798)||(37875717-37875880)
chr4 (332-413)||(37876099-37876180)
[»] chr2 (3 HSPs)
chr2 (34-302)||(23895227-23895500)
chr2 (650-798)||(23895801-23895938)
chr2 (332-413)||(23895501-23895582)
[»] chr8 (10 HSPs)
chr8 (665-798)||(18097047-18097180)
chr8 (665-798)||(18139073-18139204)
chr8 (97-272)||(18106881-18107053)
chr8 (298-413)||(18106565-18106679)
chr8 (650-763)||(18082644-18082757)
chr8 (418-562)||(18082374-18082509)
chr8 (34-95)||(18138725-18138786)
chr8 (34-95)||(18097565-18097626)
chr8 (418-467)||(18139411-18139460)
chr8 (418-470)||(18096791-18096843)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 34 - 302
Target Start/End: Complemental strand, 37876454 - 37876181
Alignment:
Q  34 atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataataata---taaaatcaggcattcataaaacatcacttt 130  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||   |||||||||||||||||||||| || ||||    
T  37876454 atcaaaactataatttaccattggagtcttttagacatttcatgtctcaaaatctataataataataatataaaatcaggcattcataaaacttcccttt 37876355  T
Q  131 tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacatggagaaggtataatgccggtttgcaaaggaacac 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37876354 tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagac-ccccacatggagaaggtataatgccggtttgcaaaggaacac 37876256  T
Q  231 acaagac--tggaatgaaac---ctacaattgagttcatctaacattnnnnnnnncaagtctattgtgcatcaacta 302  Q
    || ||||  | |||||||||   ||||||||||||||||||||||||        ||||||||||||||||||||||    
T  37876255 ac-agaccatagaatgaaacctactacaattgagttcatctaacatt-aaaaaaacaagtctattgtgcatcaacta 37876181  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 626 - 798
Target Start/End: Original strand, 37875717 - 37875880
Alignment:
Q  626 ttatgaagttgtttagaaactgtatgtg--gcagctgcacatgtgactagttccagagttgtatactccataacactatgtgacattgttatttgacatt 723  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  37875717 ttatgaagttatttagaaactgtatgtgtggcagctgcacatgtgactagttccagagttgtatactccataacactatgtgacattgtt---------- 37875806  T
Q  724 catttgtatggagaaatgagatatataacctacttgttcttggtagcaattaaaacctaattgatagatataaat 798  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37875807 -atttgtatggagaaatgagatatataacctacttgttcttggtagcaattaaaacctaattgattgatataaat 37875880  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 37876180 - 37876099
Alignment:
Q  332 gcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaaaagatagaactaacta 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37876180 gcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaaaagatagaactaacta 37876099  T

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Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 34 - 302
Target Start/End: Original strand, 23895227 - 23895500
Alignment:
Q  34 atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataa---taataatataaaatcaggcattcataaaacatcacttt 130  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||   |||||||||||||||||||||||||||||| || ||||    
T  23895227 atcaaaactataatttaccattggagtcttttagacatttcatgtctcaaaatctataataataataatataaaatcaggcattcataaaacttcccttt 23895326  T
Q  131 tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacatggagaaggtataatgccggtttgcaaaggaacac 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23895327 tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaaga-cccccacatggagaaggtataatgccggtttgcaaaggaacac 23895425  T
Q  231 acaagac--tggaatgaaac---ctacaattgagttcatctaacattnnnnnnnncaagtctattgtgcatcaacta 302  Q
    || ||||  | |||||||||   ||||||||||||||||||||||||        ||||||||||||||||||||||    
T  23895426 ac-agaccatagaatgaaacctactacaattgagttcatctaacatt-aaaaaaacaagtctattgtgcatcaacta 23895500  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 650 - 798
Target Start/End: Complemental strand, 23895938 - 23895801
Alignment:
Q  650 tgtggcagctgcacatgtgactagttccagagttgtatactccataacactatgtgacattgttatttgacattcatttgtatggagaaatgagatatat 749  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||    
T  23895938 tgtggcagctgcacatgtgactagttccagagttgtatactccataacactatgtgacattgttatttg-----------tatggagaaatgagatatat 23895850  T
Q  750 aacctacttgttcttggtagcaattaaaacctaattgatagatataaat 798  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23895849 aacctacttgttcttggtagcaattaaaacctaattgattgatataaat 23895801  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 23895501 - 23895582
Alignment:
Q  332 gcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaaaagatagaactaacta 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895501 gcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaaaagatagaactaacta 23895582  T

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Target: chr8 (Bit Score: 102; Significance: 3e-50; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 665 - 798
Target Start/End: Original strand, 18097047 - 18097180
Alignment:
Q  665 tgtgactagttccagagttgtatactccataacactatgtgacattgttatttgacattcatttgtatggagaaatgagatatataacctacttgttctt 764  Q
    |||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18097047 tgtgactaattccagagttctatactccataacactatgtcactttgttatttgacatttatttgtatggagaaatgagatatataacctacttgttctt 18097146  T
Q  765 ggtagcaattaaaacctaattgatagatataaat 798  Q
    ||| |||||||||||||||||||| || ||||||    
T  18097147 ggtggcaattaaaacctaattgattgaaataaat 18097180  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 665 - 798
Target Start/End: Complemental strand, 18139204 - 18139073
Alignment:
Q  665 tgtgactagttccagagttgtatactccataacactatgtgacattgttatttgacattcatttgtatggagaaatgagatatataacctacttgttctt 764  Q
    |||||||| |||||||||| ||||||||||||||||  || || ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  18139204 tgtgactaattccagagttctatactccataacact--gtcactttgttatttgacatttatttgtatggagaaatgagatatataatctacttgttctt 18139107  T
Q  765 ggtagcaattaaaacctaattgatagatataaat 798  Q
    |||||||||||||||||||||||| |||||||||    
T  18139106 ggtagcaattaaaacctaattgattgatataaat 18139073  T

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Target: chr8; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 18107053 - 18106881
Alignment:
Q  97 aatataaaatcaggcattcataaaacatcacttttatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacat 196  Q
    ||||||||||||| ||| |||||| | || ||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||| | |||||||    
T  18107053 aatataaaatcagacat-cataaagcttcccttttatgcgcataacacctatatcataaagcttaatagttaaactgagcaatatgaaga-ctcccacat 18106956  T
Q  197 ggagaaggtataatgccggtttgcaaaggaacacacaagactggaatgaaacctacaattgagttcatctaacatt 272  Q
     || |||||||||||||||| ||||||||||||||| |||| | ||||||||||| ||||||||||||||||||||    
T  18106955 agaaaaggtataatgccggtgtgcaaaggaacacac-agaccgaaatgaaacctataattgagttcatctaacatt 18106881  T

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Target: chr8; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 298 - 413
Target Start/End: Complemental strand, 18106679 - 18106565
Alignment:
Q  298 aactaagataaatcttcaattttgtagaaataatgcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaa 397  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||||||||||||||||| ||||    
T  18106679 aactaagataaagcttcaattttgtagaaataatgcagtcaaatatgtgtatcgccaaaataataatactact-aacaatatcaaggccgtctacgacaa 18106581  T
Q  398 aagatagaactaacta 413  Q
    ||||||||||||||||    
T  18106580 aagatagaactaacta 18106565  T

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Target: chr8; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 650 - 763
Target Start/End: Original strand, 18082644 - 18082757
Alignment:
Q  650 tgtggcagctgcacatgtgactagttccagagttgtatactccataacactatgtgacattgttatttgacattcatttgtatggagaaatgagatatat 749  Q
    |||||||| || ||||||| ||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||  ||||||||||||||||||||||||    
T  18082644 tgtggcagatgaacatgtgtctaattccagagttctatactccataacactatgtgactttgttttttgacatttgtttgtatggagaaatgagatatat 18082743  T
Q  750 aacctacttgttct 763  Q
    ||||||||||||||    
T  18082744 aacctacttgttct 18082757  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 418 - 562
Target Start/End: Original strand, 18082374 - 18082509
Alignment:
Q  418 gtcctgtcacagtagggaacaagaaccgtgtattcttcagggaagaagattcttatgatataggctggaactggattgatttaagtacccaaagagttca 517  Q
    ||||| || |||||||||||||||||||| ||||||||||| |||||||||||   ||  ||||||||       ||||||||||||||||||||||| |    
T  18082374 gtcctatctcagtagggaacaagaaccgtatattcttcaggaaagaagattct---gagctaggctggt------ttgatttaagtacccaaagagttga 18082464  T
Q  518 ggaaattggagttaatggagagttagtttgttcgcacatggtaat 562  Q
    || |||||||||||| ||||||| | |||||||||||||||||||    
T  18082465 ggtaattggagttaacggagagtcattttgttcgcacatggtaat 18082509  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 18138725 - 18138786
Alignment:
Q  34 atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataa 95  Q
    |||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  18138725 atcaaaactacaatttagcattggagtcttttagagattccatgtctcaaaatctataataa 18138786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 18097626 - 18097565
Alignment:
Q  34 atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataa 95  Q
    ||||||||||||||||| | ||| ||||| |||||||| |||||||||||||||||||||||    
T  18097626 atcaaaactataatttagcgttgaagtctattagacattccatgtctcaaaatctataataa 18097565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 18139460 - 18139411
Alignment:
Q  418 gtcctgtcacagtagggaacaagaaccgtgtattcttcagggaagaagat 467  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  18139460 gtcctatctcagtagggaacaagaaccgtatattcttcagggaagaagat 18139411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 470
Target Start/End: Original strand, 18096791 - 18096843
Alignment:
Q  418 gtcctgtcacagtagggaacaagaaccgtgtattcttcagggaagaagattct 470  Q
    ||||| || |||||||||||||||||||| |||| ||||||||||||||||||    
T  18096791 gtcctatctcagtagggaacaagaaccgtatatttttcagggaagaagattct 18096843  T

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