View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15535_low_12 (Length: 288)

Name: NF15535_low_12
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15535_low_12
NF15535_low_12
[»] chr6 (5 HSPs)
chr6 (71-249)||(33225611-33225789)
chr6 (73-128)||(33227665-33227720)
chr6 (214-249)||(15959562-15959597)
chr6 (217-249)||(1309789-1309821)
chr6 (217-249)||(24602433-24602465)
[»] chr4 (3 HSPs)
chr4 (205-249)||(8590636-8590680)
chr4 (217-247)||(30966873-30966903)
chr4 (217-249)||(15782265-15782297)
[»] chr3 (2 HSPs)
chr3 (214-247)||(17543988-17544021)
chr3 (217-249)||(53667683-53667715)
[»] scaffold0511 (1 HSPs)
scaffold0511 (217-249)||(5448-5480)
[»] chr8 (1 HSPs)
chr8 (213-249)||(15152311-15152347)
[»] chr5 (2 HSPs)
chr5 (217-249)||(1497332-1497364)
chr5 (217-249)||(18254390-18254422)
[»] chr1 (3 HSPs)
chr1 (217-249)||(24004772-24004804)
chr1 (213-249)||(26486533-26486569)
chr1 (210-246)||(29075587-29075623)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 33225789 - 33225611
Alignment:
Q  71 ttgcgtggaaaatatgaactagaattagatgccatctttttctttttcaaattatttaaacaaataaacattgctggagaattttttattttgaaggaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33225789 ttgcgtggaaaatatgaactagaattagatgccatctttttcttttttaaattatttaaacaaataaacattgctggagaattttttattttgaaggaaa 33225690  T
Q  171 actttaatttgctgaagaataacgcttgcaaatattatcttttggattaatggtgatttaccccttgtaatataggtca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33225689 actttaatttgctgaagaataacgcttgcaaatattatcttttggattaatggtgatttaccccctgtaatataggtca 33225611  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 33227720 - 33227665
Alignment:
Q  73 gcgtggaaaatatgaactagaattagatgccatctttttctttttcaaattattta 128  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||| || |||||||    
T  33227720 gcgtggaagatatgaactggaattagatgccatctttttattttttaatttattta 33227665  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 15959562 - 15959597
Alignment:
Q  214 ggattaatggtgatttaccccttgtaatataggtca 249  Q
    ||||||||||||||||||||| ||||||||||||||    
T  15959562 ggattaatggtgatttaccccctgtaatataggtca 15959597  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 1309789 - 1309821
Alignment:
Q  217 ttaatggtgatttaccccttgtaatataggtca 249  Q
    |||||||||||||||||| ||||||||||||||    
T  1309789 ttaatggtgatttaccccctgtaatataggtca 1309821  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 24602433 - 24602465
Alignment:
Q  217 ttaatggtgatttaccccttgtaatataggtca 249  Q
    ||||||||| |||||||||||||||||||||||    
T  24602433 ttaatggtgctttaccccttgtaatataggtca 24602465  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 8590636 - 8590680
Alignment:
Q  205 ttatcttttggattaatggtgatttaccccttgtaatataggtca 249  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||    
T  8590636 ttattttttgggttaatggtgatttaccccctgtaatataggtca 8590680  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 30966903 - 30966873
Alignment:
Q  217 ttaatggtgatttaccccttgtaatataggt 247  Q
    |||||||||||||||||||||||||||||||    
T  30966903 ttaatggtgatttaccccttgtaatataggt 30966873  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 15782265 - 15782297
Alignment:
Q  217 ttaatggtgatttaccccttgtaatataggtca 249  Q
    ||||||||| |||||||||||||||||||||||    
T  15782265 ttaatggtgctttaccccttgtaatataggtca 15782297  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 17544021 - 17543988
Alignment:
Q  214 ggattaatggtgatttaccccttgtaatataggt 247  Q
    |||||||||||| |||||||||||||||||||||    
T  17544021 ggattaatggtgctttaccccttgtaatataggt 17543988  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 53667683 - 53667715
Alignment:
Q  217 ttaatggtgatttaccccttgtaatataggtca 249  Q
    |||||||||||||||||| ||||||||||||||    
T  53667683 ttaatggtgatttaccccctgtaatataggtca 53667715  T

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Target: scaffold0511 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 5480 - 5448
Alignment:
Q  217 ttaatggtgatttaccccttgtaatataggtca 249  Q
    ||||||||| |||||||||||||||||||||||    
T  5480 ttaatggtgctttaccccttgtaatataggtca 5448  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 15152347 - 15152311
Alignment:
Q  213 tggattaatggtgatttaccccttgtaatataggtca 249  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  15152347 tggattaatggtgctttaccccctgtaatataggtca 15152311  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 1497332 - 1497364
Alignment:
Q  217 ttaatggtgatttaccccttgtaatataggtca 249  Q
    |||||||||||||||||| ||||||||||||||    
T  1497332 ttaatggtgatttaccccctgtaatataggtca 1497364  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 18254422 - 18254390
Alignment:
Q  217 ttaatggtgatttaccccttgtaatataggtca 249  Q
    |||||||||||||||||| ||||||||||||||    
T  18254422 ttaatggtgatttaccccctgtaatataggtca 18254390  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 24004804 - 24004772
Alignment:
Q  217 ttaatggtgatttaccccttgtaatataggtca 249  Q
    ||||||||| |||||||||||||||||||||||    
T  24004804 ttaatggtgctttaccccttgtaatataggtca 24004772  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 26486533 - 26486569
Alignment:
Q  213 tggattaatggtgatttaccccttgtaatataggtca 249  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  26486533 tggattaatagtgctttaccccttgtaatataggtca 26486569  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 29075623 - 29075587
Alignment:
Q  210 ttttggattaatggtgatttaccccttgtaatatagg 246  Q
    |||||| |||||||||||||||||| |||||||||||    
T  29075623 ttttgggttaatggtgatttaccccctgtaatatagg 29075587  T

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