View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15535_low_13 (Length: 287)

Name: NF15535_low_13
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15535_low_13
NF15535_low_13
[»] chr2 (2 HSPs)
chr2 (1-269)||(7962104-7962371)
chr2 (41-116)||(12793899-12793974)
[»] chr3 (3 HSPs)
chr3 (41-117)||(33161716-33161792)
chr3 (44-117)||(41876079-41876152)
chr3 (196-269)||(29192235-29192307)
[»] chr5 (7 HSPs)
chr5 (41-115)||(6784681-6784755)
chr5 (43-115)||(6775579-6775651)
chr5 (43-115)||(17491346-17491418)
chr5 (196-269)||(22869805-22869878)
chr5 (45-117)||(34367075-34367147)
chr5 (43-115)||(18915713-18915785)
chr5 (44-115)||(25345980-25346051)
[»] chr1 (1 HSPs)
chr1 (43-116)||(29579116-29579189)
[»] chr4 (3 HSPs)
chr4 (43-115)||(32116302-32116374)
chr4 (44-115)||(41128265-41128336)
chr4 (44-115)||(55048404-55048475)
[»] chr8 (1 HSPs)
chr8 (44-115)||(33863577-33863648)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 7962371 - 7962104
Alignment:
Q  1 atcaatgtacgtatacataatacttagctttgtaatcagcaatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcga 100  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962371 atcaatgtacgtatacataacacttagctttgtaatcatcaatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcga 7962272  T
Q  101 ttcacgtcaggttcataacnnnnnnnnnctcacattttttcatcaaaacgcaccgttttagtttcttacaaccagaacgcagcgttttatccactctctt 200  Q
    ||||||||||||||||| |         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  7962271 ttcacgtcaggttcata-ccttttttttctcacattttttcatcaaaacgcaccgttttagtttcttacaaccagaacgaagcgttttatagactctctt 7962173  T
Q  201 aactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttc 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7962172 aactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttc 7962104  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 12793899 - 12793974
Alignment:
Q  41 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12793899 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 12793974  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 33161716 - 33161792
Alignment:
Q  41 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161716 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 33161792  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 41876152 - 41876079
Alignment:
Q  44 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41876152 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcatgtcaggttcata 41876079  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 29192235 - 29192307
Alignment:
Q  196 ctcttaactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttc 269  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29192235 ctcttaac-cttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttc 29192307  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 6784755 - 6784681
Alignment:
Q  41 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6784755 aatggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6784681  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 6775651 - 6775579
Alignment:
Q  43 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6775651 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 6775579  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 17491346 - 17491418
Alignment:
Q  43 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17491346 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 17491418  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 22869805 - 22869878
Alignment:
Q  196 ctcttaactcttattttcatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttc 269  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22869805 ctcttaactcttatttttatttctcactaaaccttcatcttcatcatttttcttctgcaaaaccctagcccttc 22869878  T

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Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 34367147 - 34367075
Alignment:
Q  45 gatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34367147 gatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacatcaggttcata 34367075  T

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Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 18915713 - 18915785
Alignment:
Q  43 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18915713 tggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 18915785  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 25345980 - 25346051
Alignment:
Q  44 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 115  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  25345980 ggatccgtggcgcaatggtagcgcgtctgactccagatcaaaaggttgcgtgtttgattctcgtcgggttca 25346051  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 29579189 - 29579116
Alignment:
Q  43 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29579189 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttcat 29579116  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 32116302 - 32116374
Alignment:
Q  43 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32116302 tggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 32116374  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 41128336 - 41128265
Alignment:
Q  44 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41128336 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 41128265  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 55048475 - 55048404
Alignment:
Q  44 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55048475 ggatccgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcgggttca 55048404  T

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Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 33863577 - 33863648
Alignment:
Q  44 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33863577 ggatctgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcgattcacgtcaggttca 33863648  T

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