View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_low_15 (Length: 270)
Name: NF15535_low_15
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 23232637 - 23232876
Alignment:
| Q |
10 |
cagagaccggtcatccagaaactacaaaatagagacgccgtatacaagtgaaatatccaaaagaaacaccaaaaaagaggccaaaatacacaccacctaa |
109 |
Q |
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|||||||||||||| || |||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23232637 |
cagagaccggtcattcaaaaactacaaaatagaggcgccgtatacaagtggaatacccaaaagaaacacaaaaaaagaggccaaaatacacaccacctaa |
23232736 |
T |
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| Q |
110 |
ccacgacctaccttctacatccataacaaccaaccaccaatgccaacattaccg-cnnnnnnnncttaaaccttgaaaggttttccttttctatgatgaa |
208 |
Q |
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| T |
23232737 |
ccacgacctaccttctacatccataacaaacaaccaccaacgccaacattaccgccaaaaaaaacttaaactttgaaaggttttccttttctatgatgaa |
23232836 |
T |
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| Q |
209 |
ttgtcaacgagtttagtgcgtgatcttttataatcaattg |
248 |
Q |
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| T |
23232837 |
ttgtcaacgagtttagtgcgtgatcttttataatcaattg |
23232876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 21152678 - 21152782
Alignment:
| Q |
20 |
tcatccagaaactacaaaatagagacgccgtatacaagtgaaatatccaaaagaaacaccaaaaaagaggccaaaatacacaccacctaaccacgaccta |
119 |
Q |
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||||| |||||||| |||| |||| ||||||||| | | | || |||||||| |||||| |||||||| ||||||||||| || |||||||||||||||| |
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| T |
21152678 |
tcatctagaaactataaaacagaggcgccgtatataggcggaacatccaaaataaacacaaaaaaagatgccaaaatacatactacctaaccacgaccta |
21152777 |
T |
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| Q |
120 |
ccttc |
124 |
Q |
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||||| |
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| T |
21152778 |
ccttc |
21152782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 28171694 - 28171539
Alignment:
| Q |
10 |
cagagaccggtcatccagaaactacaaaatagagacgccgtatacaagtgaaatatccaaaagaaacacc-aaaaaagaggccaaaatacacaccaccta |
108 |
Q |
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|||||||||||| |||| ||||||||||| | || | |||||| | | | || ||| |||||||| | | |||||||| ||||||| |||||||| ||| |
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| T |
28171694 |
cagagaccggtcgtccaaaaactacaaaacataggtgtcgtatatatgcggaacatcaaaaagaaaaaacgaaaaaagacgccaaaacacacaccaacta |
28171595 |
T |
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| Q |
109 |
accacgacctaccttctacatccataacaaccaaccaccaatgccaacattaccgc |
164 |
Q |
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||||||||||||||| ||||||||||||| ||||| |||| ||||||| ||||| |
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| T |
28171594 |
cccacgacctaccttcaacatccataacaagcaacccccaacaccaacatcaccgc |
28171539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 36275776 - 36275898
Alignment:
| Q |
17 |
cggtcatccagaaactacaaaatagagacgccgtatacaagtgaaatatccaaaagaaacaccaaaaaa-gaggccaaaatacacaccacctaaccacga |
115 |
Q |
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|||||||||||||||||||||| | || || ||||| | | | || || ||||||||| ||||||||| || ||||||| |||||||||||||||| || |
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| T |
36275776 |
cggtcatccagaaactacaaaacaaaggcgttgtatataggcggaacatacaaaagaaataccaaaaaaagacgccaaaacacacaccacctaaccaaga |
36275875 |
T |
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| Q |
116 |
cctaccttctacatccataacaa |
138 |
Q |
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||||||||| ||| ||||||||| |
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| T |
36275876 |
cctaccttcaacacccataacaa |
36275898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 5221530 - 5221622
Alignment:
| Q |
66 |
ccaaaagaaacaccaaaaaagaggccaaaatacacaccacctaaccacgacctaccttctacatccataacaaccaaccaccaatgccaacat |
158 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| || || ||| || || |||||||||| |||||||| |
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| T |
5221530 |
ccaaaagaaacaccaaaaaagacaacaaaacacacaccacctaaccacgaccaaccatcaactcccaaaataaacaaccaccaacgccaacat |
5221622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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