View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_low_16 (Length: 262)
Name: NF15535_low_16
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_low_16 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 28 - 243
Target Start/End: Original strand, 90935 - 91150
Alignment:
| Q |
28 |
cacagacccaaatgatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagag |
127 |
Q |
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| T |
90935 |
cacagacccaaatgatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaacacatttgatgctttagag |
91034 |
T |
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| Q |
128 |
catgatgttttggaagcattctcttcaatttttcctcctatcttttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaact |
227 |
Q |
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| T |
91035 |
catgatgttttggaagcattctcttcaatttttcctcctatctattccattggccccttaaatttactcttgaaagatgtgaccaatgaagaattgaact |
91134 |
T |
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| Q |
228 |
caatagggtccaacct |
243 |
Q |
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|||||||||||||||| |
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| T |
91135 |
caatagggtccaacct |
91150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 26672664 - 26672492
Alignment:
| Q |
71 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatttttcctcctatct |
170 |
Q |
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| T |
26672664 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26672565 |
T |
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| Q |
171 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacct |
243 |
Q |
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| T |
26672564 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacct |
26672492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 26944262 - 26944090
Alignment:
| Q |
71 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatttttcctcctatct |
170 |
Q |
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| T |
26944262 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26944163 |
T |
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| Q |
171 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacct |
243 |
Q |
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| T |
26944162 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacct |
26944090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 26901953 - 26901778
Alignment:
| Q |
74 |
caaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaat------ttttcctccta |
167 |
Q |
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| T |
26901953 |
caaagagctctaaaagcttcagcaataattttaaacacatttgatgcattagaacacaacgttttagaagcattctcatccattgataatttacctccag |
26901854 |
T |
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| Q |
168 |
tcttttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacct |
243 |
Q |
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| T |
26901853 |
tttattcaattggtccaataaattttctcttaaaaaatgtgactgatgaagaattgaactctattggatccaacct |
26901778 |
T |
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