View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_low_18 (Length: 257)
Name: NF15535_low_18
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_low_18 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36806000 - 36806241
Alignment:
| Q |
1 |
tataatatgtgtgacggaaataattccgttaaagttcttcatgaaaaacaaaattctatgtatacagtaatttcgtcttttacatatttttcagttaaac |
100 |
Q |
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| T |
36806000 |
tataatatgtgtgacggaaataattccgttaaagttcttcatgaaaaacaaaattctatgtatacaacaatttcgtcttttacatatttctcaatcaaac |
36806099 |
T |
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| Q |
101 |
aacatgtgtatacagcaattttcattagggagggacattttaccccacactccaacaattatacttccaccctacaaataatttaaaaataccaatttta |
200 |
Q |
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| T |
36806100 |
aacatgtgtatacagcaattttcattagggagggacattttaccccacactccaacaattatccttccacactacaaataa-ttaaaaataccaatttta |
36806198 |
T |
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| Q |
201 |
acattttcagattcacacccttccaccccatcgtgttgtgttt |
243 |
Q |
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| T |
36806199 |
accttttcaaattcacacccttccaccccatcttgttgtgttt |
36806241 |
T |
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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 51326447 - 51326501
Alignment:
| Q |
1 |
tataatatgtgtgacggaaataattccgttaaagttcttcatgaaaaacaaaatt |
55 |
Q |
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| T |
51326447 |
tataatatgtgtgacggaaataattacgttaaagttcttcatcaaaaacaaaatt |
51326501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 2831073 - 2831128
Alignment:
| Q |
71 |
tttcgtcttttacatatttttc--agttaaacaacatgtgtatacagcaattttca |
124 |
Q |
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| T |
2831073 |
tttcgtcttttacatatgtttctcagccaaacaacatgtgtatacaacaattttca |
2831128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5845030 - 5844976
Alignment:
| Q |
1 |
tataatatgtgtgacggaaataattccgttaaagttcttcatgaaaaacaaaatt |
55 |
Q |
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| T |
5845030 |
tataatatatgtgacggaaataattctgttaaagttcttcatgaaaaataaaatt |
5844976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 2092851 - 2092804
Alignment:
| Q |
185 |
aaaaataccaattttaacattttcagattcacacccttccaccccatc |
232 |
Q |
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| T |
2092851 |
aaaaatacctattttaaccttttcaaaatcacacccttccaccccatc |
2092804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33053562 - 33053508
Alignment:
| Q |
1 |
tataatatgtgtgacggaaataattccgttaaagttcttcatgaaaaacaaaatt |
55 |
Q |
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| T |
33053562 |
tataatatatgtgacggaaataattctgttaaatttcttcatcaaaaacaaaatt |
33053508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 49668 - 49741
Alignment:
| Q |
135 |
acattttaccccacactccaacaattatacttccaccc-tacaaataatttaaaaataccaattttaacatttt |
207 |
Q |
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| T |
49668 |
acattataccccataccccaacaattatacccctacccctacaaataattaaaaaataccaagtttaacctttt |
49741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 35075954 - 35075898
Alignment:
| Q |
71 |
tttcgtcttttacatatttttc--agttaaacaacatgtgtatacagcaattttcat |
125 |
Q |
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| T |
35075954 |
tttcgtcttttacatgtgtttctcagccaaacaacatgtgtatacagcaattttcat |
35075898 |
T |
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