View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_low_19 (Length: 253)
Name: NF15535_low_19
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 15620702 - 15620914
Alignment:
| Q |
13 |
attatactattttgatcacaatgaaaatgaaatctatttacaatagcaattaaatcattgagaatattgattcataactcagccaatttatcttttggat |
112 |
Q |
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| T |
15620702 |
attatactattttgatcacaatgaaaatgaaatctaattacaatagcaattaaatcattgagaatattgattcataactcagccaatttatcttttggat |
15620801 |
T |
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| Q |
113 |
ttgattccgttttttaacattagtatttacttcatgcagacatatgatgactatctttttagtagactaacaaagtttttcctactagatattggaaggt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15620802 |
ttgattccgttttttaacattagtatttacttcatgaaaacatatgatgactatctttttagtagactaacaaagtttttcctactagatattggaaggt |
15620901 |
T |
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| Q |
213 |
tttgtagtataga |
225 |
Q |
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| T |
15620902 |
tttgtagtataga |
15620914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 15685055 - 15685230
Alignment:
| Q |
21 |
attttgatcacaatgaaaatgaaatctatttacaatagcaat---taaatcattgagaatattgattcataactcagccaatttatcttttggatttgat |
117 |
Q |
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||||| |||| ||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||| | || | | |
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| T |
15685055 |
attttaatcataatgaaaataaattctaattacaatagcaatatttaaatcattgagaatattgattcataactcgaccaattaatccttttgtttcggt |
15685154 |
T |
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| Q |
118 |
tc-cgttttttaacattagtatttacttcatgcagacatatgatgactatctttttagtagactaacaaagttttt |
192 |
Q |
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|| ||||| |||||||||||||||||||| | |||||| ||||| |||| ||||||| | ||||||||||||| |
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| T |
15685155 |
tcaaatttttaaacattagtatttacttcataaaaacatatcatgaccatctatttagtacattaacaaagttttt |
15685230 |
T |
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