View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_low_2 (Length: 626)
Name: NF15535_low_2
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 116 - 612
Target Start/End: Complemental strand, 28591750 - 28591241
Alignment:
| Q |
116 |
tgtaaccttttcgcttaaagtcatcaaatcccaatgtaagattaagagagaggtagatgattatttaaggagagaaaggtgttgggtgatgggtatcatc |
215 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591750 |
tgtaactttttcgcttaaagtcatcaaatcccaa-----gattaagagagaggtagatgattatttaaggagagaaaggtgttgggtgatgggtatcatc |
28591656 |
T |
|
| Q |
216 |
caataagttgaacgcaacacttcaataact-----------------cactcttacta---actcaacacattgtcgtatttacgtgctttactctctct |
295 |
Q |
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|||||| ||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28591655 |
caataaattgaacgcaacccttcaattacttctcctgttacgcaacacactcttactactaactcaacacattgtcgtatttacgtgctttactctct-- |
28591558 |
T |
|
| Q |
296 |
tttcaattacaaaaagtttgcatgcattcttactcactcttcattacacatcacatttatctcaatcttccttaattaatcctcataaaccaactaatta |
395 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28591557 |
tttcaattacaaaaagttcgcatgcatttttactcactcttcattacacatcacatttatcttaatcttccttaattaatcctcataaaccaactaatta |
28591458 |
T |
|
| Q |
396 |
ataactcctcttataagctcaaactctcatacaaatttagttatttgacttttacactctatttgtttctttgcgcggaaaaaccgttaaatttgaaaat |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591457 |
ataactcctcttataagctcaaactctcatacaaatttagttatttgacttttacactctatttgtttctttgcgcggaaaaaccgttaaatttgaaaat |
28591358 |
T |
|
| Q |
496 |
ggcttcttctaattctactaacttgcttacgtttcctttgtctccaactgaactgcttaactcacattttcctcaattccacaccgactctcattacgat |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591357 |
ggcttcttctaattctactaacttgcttacgtttcctttgtctccaactgaactgcttaactcacattttcctcaattccacaccgactctcattacgat |
28591258 |
T |
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| Q |
596 |
aacttctatgtcaatgc |
612 |
Q |
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||||||||||||||||| |
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| T |
28591257 |
aacttctatgtcaatgc |
28591241 |
T |
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