View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15535_low_22 (Length: 238)
Name: NF15535_low_22
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 2440611 - 2440819
Alignment:
| Q |
14 |
agacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440611 |
agacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtg |
2440710 |
T |
|
| Q |
114 |
tcagacttgaccattcagaaagcaaccttgttaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctttgggccacag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2440711 |
tcagacttgaccattcagaaagcaaccttgctaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagtaaatgacctttgggccacag |
2440810 |
T |
|
| Q |
214 |
cgaacaatt |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
2440811 |
cgaacaatt |
2440819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 41656494 - 41656294
Alignment:
| Q |
18 |
ggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcag |
117 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
41656494 |
ggaacaccaataaaacttaactcttctgacctgacacccattgctaaagcatgggaaacatttattttgcataccttgcttccgagttcaaatgtgtcag |
41656395 |
T |
|
| Q |
118 |
acttgaccattcagaaagcaaccttgttaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctttgggccacagcgaa |
217 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41656394 |
acttgccccttcagaaagcaaccttgataactgcaatccttaagggcgaaccagtcaatgtcgtccgtctcctagcaaatgacctttcggccacagcgaa |
41656295 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
|
| |
|
|
| T |
41656294 |
c |
41656294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 41665255 - 41665055
Alignment:
| Q |
18 |
ggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcag |
117 |
Q |
| |
|
||||||||| || ||| ||| || ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
41665255 |
ggaacaccatcaagactccacacttctgacctcacacccattgctaaagcatgggcaacatttattttgcgaaccttgctcccgtgttcaaatgtgtcag |
41665156 |
T |
|
| Q |
118 |
acttgaccattcagaaagcaaccttgttaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctttgggccacagcgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||| |
|
|
| T |
41665155 |
acttgaccattcagaaagcaaccttgctgactgcaattcttaagggtgaaccagtcaatgtcggtcgtctcctagcaaatgatctccgggccacagcgaa |
41665056 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
|
| |
|
|
| T |
41665055 |
c |
41665055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 41706490 - 41706290
Alignment:
| Q |
14 |
agacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtg |
113 |
Q |
| |
|
|||||||||||| | |||||||| | || ||||||| |||||| ||||||||| |||||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
41706490 |
agacggaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtg |
41706391 |
T |
|
| Q |
114 |
tcagacttgaccattcagaaagcaaccttgttaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctttgggccacag |
213 |
Q |
| |
|
|||||||||||||||| ||||||| |||| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
41706390 |
tcagacttgaccattctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttgggtcacag |
41706291 |
T |
|
| Q |
214 |
c |
214 |
Q |
| |
|
| |
|
|
| T |
41706290 |
c |
41706290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 41648370 - 41648214
Alignment:
| Q |
51 |
acacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcagacttgaccattcagaaagcaaccttgttaactg |
150 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||| |||||| |||||||||| |||| | |||||| | |||| |
|
|
| T |
41648370 |
acacccattgcgaaagcatggacaacatttgttttgcatacattactcccatgttcaaatgcgtcagagttgaccattccgaaatcgaccttgctgactg |
41648271 |
T |
|
| Q |
151 |
caatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctttggg |
207 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||||||||||| | |||||||||| |
|
|
| T |
41648270 |
caatcctgaagggtgaaccaatcaatgttggtcgtctcctagcagaagacctttggg |
41648214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 41716263 - 41716093
Alignment:
| Q |
44 |
tgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcagacttgaccattcagaaagcaaccttg |
143 |
Q |
| |
|
|||||| || ||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| | ||| |
|
|
| T |
41716263 |
tgacctcactcccgttgctaaagtatgggcaatgtttgttttgcgcaccttgctcccatgttcaaatagatcagacttgaccattctaaaagctaactta |
41716164 |
T |
|
| Q |
144 |
ttaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctttgggccacagc |
214 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||||| |
|
|
| T |
41716163 |
ctgactgcaatccttaagggtgagccagtcaatgttggtcgtctcctagcaaatgacatttgggtcacagc |
41716093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University