View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15535_low_3 (Length: 596)

Name: NF15535_low_3
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15535_low_3
NF15535_low_3
[»] chr8 (5 HSPs)
chr8 (85-275)||(4961435-4961626)
chr8 (491-578)||(4961040-4961127)
chr8 (404-494)||(4961151-4961241)
chr8 (48-116)||(39162165-39162234)
chr8 (318-399)||(4961306-4961387)
[»] chr4 (5 HSPs)
chr4 (170-244)||(37826024-37826098)
chr4 (170-214)||(50674790-50674834)
chr4 (60-115)||(14623392-14623447)
chr4 (409-442)||(7787842-7787875)
chr4 (67-116)||(49437660-49437709)
[»] chr2 (1 HSPs)
chr2 (63-115)||(14505567-14505619)
[»] chr3 (4 HSPs)
chr3 (52-116)||(32676164-32676229)
chr3 (74-116)||(55260498-55260540)
chr3 (75-116)||(42139646-42139687)
chr3 (75-107)||(40139085-40139117)
[»] scaffold0005 (1 HSPs)
scaffold0005 (60-115)||(193936-193991)
[»] chr6 (1 HSPs)
chr6 (62-97)||(3649930-3649965)
[»] chr1 (2 HSPs)
chr1 (48-93)||(20791618-20791663)
chr1 (54-113)||(34856621-34856681)
[»] chr7 (1 HSPs)
chr7 (8-44)||(47732396-47732432)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 7e-66; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 85 - 275
Target Start/End: Complemental strand, 4961626 - 4961435
Alignment:
Q  85 ttagctcaaccaaatgagctacctatccccccgactggattgagttctgaatgtattttgt---cactgcttgaaactattttaaatgatatggtaaatt 181  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||   |||| |||||||||||||||||||||||||||||||    
T  4961626 ttagctcaaccaaatgagctacctatcccct-gactggatt-agttctgaatgtattttgttgtcactacttgaaactattttaaatgatatggtaaatt 4961529  T
Q  182 aatatgatgagtttatgcattttggaaggaaaaataagggttgttctctaatttcagtggacttgttaacttatgcccttgctatttctctgtt 275  Q
    ||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||    
T  4961528 aatctgatgagtttatgcattttggaagcaaaaataagagttgtcctctaatttcagtggacttgttaacttctgcctttgccatttctctgtt 4961435  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 491 - 578
Target Start/End: Complemental strand, 4961127 - 4961040
Alignment:
Q  491 atgataaatcgctcgaagaaacatagtataataaaggactcattctctcattgcgcatctaaaagcttttacatactcaactctattc 578  Q
    |||| ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  4961127 atgacaaatcgctcgaagaaacatagtataataaaggcttcattttctcattgcgcatctaaaagcttttacataatcaactctattc 4961040  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 404 - 494
Target Start/End: Complemental strand, 4961241 - 4961151
Alignment:
Q  404 atactactagaggaagcattcttttaaagatagcataaacactataatagatttgcatgcatgtttatagaaactgtgacttgcacaatga 494  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |  || ||||||||| ||||||||||||||||||||||||||||||||    
T  4961241 atactactagaggaaacattcttttaaagataggataaacaccacgattgatttgcatacatgtttatagaaactgtgacttgcacaatga 4961151  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 39162234 - 39162165
Alignment:
Q  48 gaaccttggaccttta-cttcttacctcctttaatcccttagctcaaccaaatgagctacctatcccccc 116  Q
    ||||| |||||||||| || |||| || ||||| ||||||||||||||||||||||||||| ||||||||    
T  39162234 gaaccctggacctttaactccttatctactttagtcccttagctcaaccaaatgagctacccatcccccc 39162165  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 399
Target Start/End: Complemental strand, 4961387 - 4961306
Alignment:
Q  318 aagactttaaataagaaacaagaaaattaaatctttaacatttta-ttcaatggataaagctaacaaaaactacataattttt 399  Q
    ||||||||||| |||||| |  ||||||||||||| ||||| | | ||||||| ||| ||||||||||||||| |||||||||    
T  4961387 aagactttaaacaagaaatacaaaaattaaatctt-aacatataagttcaatgaatatagctaacaaaaactagataattttt 4961306  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 37826098 - 37826024
Alignment:
Q  170 atatggtaaattaatatgatgagtttatgcattttggaaggaaaaataagg-gttgttctctaatttcagtggact 244  Q
    ||||||||||||||| ||||||| |||||||| || |||||||||||||||  |||||||||||||||||||||||    
T  37826098 atatggtaaattaatttgatgaggttatgcatatt-gaaggaaaaataaggttttgttctctaatttcagtggact 37826024  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 50674790 - 50674834
Alignment:
Q  170 atatggtaaattaatatgatgagtttatgcattttggaaggaaaa 214  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||    
T  50674790 atatggtaaattaatctaatgagtttatgcatttttgaaggaaaa 50674834  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 14623447 - 14623392
Alignment:
Q  60 tttacttcttacctcctttaatcccttagctcaaccaaatgagctacctatccccc 115  Q
    |||||| ||| ||||||||||||||||||||||||||| |||| |||  |||||||    
T  14623447 tttactcctttcctcctttaatcccttagctcaaccaagtgagatactcatccccc 14623392  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 7787842 - 7787875
Alignment:
Q  409 actagaggaagcattcttttaaagatagcataaa 442  Q
    |||||||||||||||||||||||||||| |||||    
T  7787842 actagaggaagcattcttttaaagatagaataaa 7787875  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 49437709 - 49437660
Alignment:
Q  67 cttacctcctttaatcccttagctcaaccaaatgagctacctatcccccc 116  Q
    |||| ||||||||||| | || ||||||||| ||||||||||||||||||    
T  49437709 cttaactcctttaatctcgtaactcaaccaagtgagctacctatcccccc 49437660  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 14505567 - 14505619
Alignment:
Q  63 acttcttacctcctttaatcccttagctcaaccaaatgagctacctatccccc 115  Q
    |||| ||| ||| |||||||||||||||||||||||||||||| |||||||||    
T  14505567 acttgttaactcatttaatcccttagctcaaccaaatgagctatctatccccc 14505619  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 32676229 - 32676164
Alignment:
Q  52 cttggacctttacttc-ttacctcctttaatcccttagctcaaccaaatgagctacctatcccccc 116  Q
    ||||||||||||  || ||| ||||||||||||| |||||||||||||||| ||||| ||||||||    
T  32676229 cttggacctttaactcgttaactcctttaatcccatagctcaaccaaatgaactacccatcccccc 32676164  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 55260498 - 55260540
Alignment:
Q  74 cctttaatcccttagctcaaccaaatgagctacctatcccccc 116  Q
    |||||||||||||||||||||||| ||||||| | ||||||||    
T  55260498 cctttaatcccttagctcaaccaagtgagctaaccatcccccc 55260540  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 42139646 - 42139687
Alignment:
Q  75 ctttaatcccttagctcaaccaaatgagctacctatcccccc 116  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||    
T  42139646 ctttaatcccttagctcaaccaagtgagcaacccatcccccc 42139687  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 40139117 - 40139085
Alignment:
Q  75 ctttaatcccttagctcaaccaaatgagctacc 107  Q
    ||||||||||||||||||||||| |||||||||    
T  40139117 ctttaatcccttagctcaaccaagtgagctacc 40139085  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 193936 - 193991
Alignment:
Q  60 tttacttcttacctcctttaatcccttagctcaaccaaatgagctacctatccccc 115  Q
    |||||| ||| ||||||||||||||||||||||||||| |||| |||  |||||||    
T  193936 tttactcctttcctcctttaatcccttagctcaaccaagtgagatactcatccccc 193991  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 3649930 - 3649965
Alignment:
Q  62 tacttcttacctcctttaatcccttagctcaaccaa 97  Q
    ||||||||||||||||| ||||||||||||||||||    
T  3649930 tacttcttacctccttttatcccttagctcaaccaa 3649965  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 20791618 - 20791663
Alignment:
Q  48 gaaccttggacctttacttcttacctcctttaatcccttagctcaa 93  Q
    ||||| ||||||||  || |||||||||||||||||||||||||||    
T  20791618 gaaccatggaccttcgctccttacctcctttaatcccttagctcaa 20791663  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 34856681 - 34856621
Alignment:
Q  54 tggaccttt-acttcttacctcctttaatcccttagctcaaccaaatgagctacctatccc 113  Q
    ||||||||| ||| |||| ||||||||| || ||||||||||||| ||||||||| |||||    
T  34856681 tggacctttcactccttaactcctttaaacctttagctcaaccaattgagctacccatccc 34856621  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 47732432 - 47732396
Alignment:
Q  8 aatgacaaatgttagttgatatgttaatattttctca 44  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  47732432 aatgacaagtgttagttgttatgttaatattttctca 47732396  T

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