View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_low_5 (Length: 468)
Name: NF15535_low_5
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 468
Target Start/End: Complemental strand, 9336827 - 9336381
Alignment:
| Q |
6 |
gagtgagatgaataatgttatcagaatggaaggatagtcgttttcattcgaaccgggaggtgcgaagtgaagtgaatatcgatttggcttctatctgtaa |
105 |
Q |
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| T |
9336827 |
gagtgcgaagaataatgttatcagaatggaaggatagtctttttcattcgaactgggaggtgcgaagtgaagcgaatatcgatttggcttctatctgtaa |
9336728 |
T |
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| Q |
106 |
atccatcaccgatcctaaggatcttcgcatccttgaattcggttaatgtctcagtttttggtaggtagggtttttgcttttaacggtgatttgggtggag |
205 |
Q |
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| T |
9336727 |
atccatcatcgatcctaaggaccctcgcatccttgaattcggttaatgtttcagtttttggtaggtagggtttttgcttttaacggtgatttgggtggag |
9336628 |
T |
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| Q |
206 |
ttagaactttgaatctgttaggtcattttctcaaaaagactgtggtggaaagactgtgacaaggaatatcacatgaagagaaagccaacacagtcccaac |
305 |
Q |
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| T |
9336627 |
ttagaactttgaatctggtaggtcattttctcaaaaagac--------------tgtgacaaggaatatcacacgaagagaaagccaagacagtcccaac |
9336542 |
T |
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| Q |
306 |
cacatatatatacagccacaagaacattaatcagaagagtgaagaccaaaaccagctggacaacaatgttgatgaacgagttacttgtactcactctcat |
405 |
Q |
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| T |
9336541 |
cac--atatatacagccacaagaacattaatcagaagagtgaagaccaaaaccagctggacaacaatgttgatgaacgagttacttgtactcactctcat |
9336444 |
T |
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| Q |
406 |
tttcgatatgatctattattaatctttgcagttcaaggnnnnnnngaatgttcctgaataaat |
468 |
Q |
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| T |
9336443 |
tttcgatatgatctattattaatctttgcagttcaaggaaaaaaagaatgttcctgaataaat |
9336381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 8209426 - 8209356
Alignment:
| Q |
80 |
aatatcgatttggcttctatctgtaaatccatcaccgatcctaaggatcttcgcatccttgaattcggtta |
150 |
Q |
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| T |
8209426 |
aatatcgatttagcttctctctttcactccatcaccgatcctaacgatcctcgcattcgtcaattcggtta |
8209356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 42365268 - 42365183
Alignment:
| Q |
65 |
gtgcgaagtgaagtgaatatcgatttggcttctatctgtaaatccatcaccgatcctaaggatcttcgcatccttgaattcggtta |
150 |
Q |
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| T |
42365268 |
gtgcgaaatgaagccaatattgatctggcttctctctgtgactcaatcaccgatcctaaagaccctcgcatccgtgaattcggtta |
42365183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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