View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15535_low_6 (Length: 464)

Name: NF15535_low_6
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15535_low_6
NF15535_low_6
[»] chr8 (4 HSPs)
chr8 (21-357)||(4903301-4903639)
chr8 (357-448)||(9336312-9336403)
chr8 (229-336)||(1556798-1556905)
chr8 (82-149)||(1556987-1557054)
[»] chr7 (2 HSPs)
chr7 (23-357)||(22153920-22154235)
chr7 (23-357)||(22209835-22210150)
[»] chr4 (2 HSPs)
chr4 (88-288)||(34821645-34821847)
chr4 (158-289)||(53561813-53561944)


Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 4903639 - 4903301
Alignment:
Q  21 tgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4903639 tgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcg 4903540  T
Q  121 tgaagaagtttccaagtaaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctccc 218  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  4903539 tgaagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcgagaaaaccttcctcgggagaccatcaagatcttcctccc 4903440  T
Q  219 ttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4903439 ttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaagac 4903340  T
Q  319 aaacccattcaaatcctcgagcaaatcatgaagaagtaa 357  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4903339 aaacccattcaaatcctcgagcaaatcatgaagaagtaa 4903301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 357 - 448
Target Start/End: Original strand, 9336312 - 9336403
Alignment:
Q  357 agtccctggtataagtatacgtgtcatgtattcattattgagggatatttggttaggatatatgcgatcatttattcaggaacattcttttt 448  Q
    |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336312 agtctctggtataagtatatgtgtcatgtattcattgttgagggatatttggttaggatatatgcgatcatttattcaggaacattcttttt 9336403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 336
Target Start/End: Complemental strand, 1556905 - 1556798
Alignment:
Q  229 tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattc 328  Q
    |||||||||||| |||||||||||||| ||||| ||||| || ||||| |||||||||||  |||||| |||| |||| ||  | ||  |||| ||||||    
T  1556905 tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcctcctcttccacaaaaccaaaaccattc 1556806  T
Q  329 aaatcctc 336  Q
    ||||||||    
T  1556805 aaatcctc 1556798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 1557054 - 1556987
Alignment:
Q  82 tttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccac 149  Q
    ||||| || ||||||||| ||||||| || |||||||| || ||||||||||||| ||||||||||||    
T  1557054 tttctaattgcaaggttggtctttgtaggaattctatcgtggagaagtttccaagaaaaaaccaccac 1556987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 23 - 357
Target Start/End: Original strand, 22153920 - 22154235
Alignment:
Q  23 aatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatg 122  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         
T  22153920 aatctttaatcgaattgttgcaccaaacacactgaagagagctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattcta----- 22154014  T
Q  123 aagaagtttccaagtaaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctccctt 220  Q
                    ||||||| ||||| ||||||  |||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||    
T  22154015 ----------------aaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctccctt 22154098  T
Q  221 atcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaa 320  Q
    |||||||||||||||||||||||||| ||| ||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  22154099 atcatcaatgtttccaatttagaataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaa 22154198  T
Q  321 acccattcaaatcctcgagcaaatcatgaagaagtaa 357  Q
    ||||||||||||| || | |||||| |||||||||||    
T  22154199 acccattcaaatcttctaacaaatcgtgaagaagtaa 22154235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 23 - 357
Target Start/End: Original strand, 22209835 - 22210150
Alignment:
Q  23 aatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatg 122  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         
T  22209835 aatctttaatcgaattgttgcaccaaacacactgaagagagctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattcta----- 22209929  T
Q  123 aagaagtttccaagtaaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctccctt 220  Q
                    ||||||| ||||| ||||||  |||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||    
T  22209930 ----------------aaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctccctt 22210013  T
Q  221 atcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaa 320  Q
    |||||||||||||||||||||||||| ||| ||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  22210014 atcatcaatgtttccaatttagaataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaa 22210113  T
Q  321 acccattcaaatcctcgagcaaatcatgaagaagtaa 357  Q
    ||||||||||||| || | |||||| |||||||||||    
T  22210114 acccattcaaatcttctaacaaatcgtgaagaagtaa 22210150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 288
Target Start/End: Original strand, 34821645 - 34821847
Alignment:
Q  88 atagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaa 185  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| || |  ||||  ||||||| ||| ||||  || |    
T  34821645 atagcaaggttgatttttgttgggattctatcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaaca 34821744  T
Q  186 ccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacct 285  Q
    ||||||||     | | | ||||   ||  ||   | |||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||    
T  34821745 ccctcctctccccatcttgaagattgtcaaccggcaccatcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacct 34821844  T
Q  286 cca 288  Q
    |||    
T  34821845 cca 34821847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 158 - 289
Target Start/End: Complemental strand, 53561944 - 53561813
Alignment:
Q  158 gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta 257  Q
    ||||| |||||||||||||||   || |||||||||   ||  ||||||| |  || ||||| | |||||||||||||||||| |||||||| ||||| |    
T  53561944 gccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaa 53561845  T
Q  258 ccgaaaaagcaccttcctcttccaacctccaa 289  Q
    ||||||||| ||| ||||||||||| ||||||    
T  53561844 ccgaaaaagtaccgtcctcttccaaactccaa 53561813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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