View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15535_low_7 (Length: 450)

Name: NF15535_low_7
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15535_low_7
NF15535_low_7
[»] chr4 (16 HSPs)
chr4 (188-441)||(7004523-7004776)
chr4 (172-399)||(7047286-7047513)
chr4 (158-391)||(7014140-7014373)
chr4 (185-399)||(7039855-7040069)
chr4 (159-354)||(7056111-7056306)
chr4 (159-353)||(7027562-7027756)
chr4 (253-399)||(6994718-6994865)
chr4 (19-105)||(7004401-7004487)
chr4 (19-105)||(7039645-7039731)
chr4 (253-353)||(7020647-7020747)
chr4 (30-105)||(7027250-7027325)
chr4 (30-105)||(7047038-7047113)
chr4 (19-105)||(7013950-7014036)
chr4 (19-101)||(7020326-7020408)
chr4 (19-105)||(7053011-7053097)
chr4 (19-105)||(6994522-6994608)
[»] chr2 (1 HSPs)
chr2 (65-102)||(5859195-5859232)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 188 - 441
Target Start/End: Original strand, 7004523 - 7004776
Alignment:
Q  188 atgtgtttgaacttgaatttaaagagtgatgttattatgcttaatggtctaccattatatcttttcagtcactgcagagaaactgtaaaggagagtatat 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  7004523 atgtgtttgaacttgaatttaaagagtgatgttattatgcttaatggtctatcattatatcttttcagtcactgcagagaaattgtaaaggagagtatat 7004622  T
Q  288 tgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaaccattccaattttatgtatacctattataaagaaga 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  7004623 tgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaaccattccaattttatatatacctattataaagagga 7004722  T
Q  388 tactaagttttgaaaggaagagaaataacatacgaggtaaggcggaagtctctg 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7004723 tactaagttttgaaaggaagagaaataacatacgaggtaaggcggaagtctctg 7004776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 172 - 399
Target Start/End: Original strand, 7047286 - 7047513
Alignment:
Q  172 gttgattacaatgatgatgtgtttgaacttgaatttaaagagtgatgttattatgcttaatggtctaccattatatcttttcagtcactgcagagaaact 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  7047286 gttgattacaataatgatgtgtttgaacttgaatttaaagagtgatgttattatgcttaatggtctatcattatatcttttcagtcactgcagagaaatt 7047385  T
Q  272 gtaaaggagagtatattgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaaccattccaattttatgtata 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7047386 gtaaaggagagtatattgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaaccattccaattttatgtata 7047485  T
Q  372 cctattataaagaagatactaagttttg 399  Q
    ||||||||||||| ||| ||||||||||    
T  7047486 cctattataaagaggatgctaagttttg 7047513  T

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Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 158 - 391
Target Start/End: Original strand, 7014140 - 7014373
Alignment:
Q  158 cattgtattttcctgttgattacaatgatgatgtgtttgaacttgaatttaaagagtgatgttattatgcttaatggtctaccattatatcttttcagtc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||    
T  7014140 cattgtattttcctgttgattacaatgatgatgtgtttgaacttgaatttaaattttgatgttattatgcttaatggtctaccattatatattttcagtc 7014239  T
Q  258 actgcagagaaactgtaaaggagagtatattgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaaccattc 357  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7014240 actgcagagaaattgtaaaggagagtatattgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaaccattc 7014339  T
Q  358 caattttatgtatacctattataaagaagatact 391  Q
    ||||||||||||| ||| ||||||||||||||||    
T  7014340 caattttatgtatgcctgttataaagaagatact 7014373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 185 - 399
Target Start/End: Original strand, 7039855 - 7040069
Alignment:
Q  185 atgatgtgtttgaacttgaatttaaagagtgatgttattatgcttaatggtctaccattatatcttttcagtcactgcagagaaactgtaaaggagagta 284  Q
    ||||||| |||| |||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7039855 atgatgtttttgtacttgaatttaatggatgatgttattatgcttaatcgtctaccattatatcttttcagtcactgcagagaaattgtaaaggagagta 7039954  T
Q  285 tattgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaaccattccaattttatgtatacctattataaaga 384  Q
     ||| ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||| || |||||||||||||||||||||    
T  7039955 cattaatgtagattccagaaatgagttgtgtttaagagatctccagtcctttgatgaggcaagtaaaccctcccagttatatgtatacctattataaaga 7040054  T
Q  385 agatactaagttttg 399  Q
     ||||||| ||||||    
T  7040055 ggatactacgttttg 7040069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 159 - 354
Target Start/End: Original strand, 7056111 - 7056306
Alignment:
Q  159 attgtattttcctgttgattacaatgatgatgtgtttgaacttgaatttaaagagtgatgttattatgcttaatggtctaccattatatcttttcagtca 258  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||| || ||||| |||||||||||||| ||||| | ||||||| ||||||||    
T  7056111 attgtattttcttgttgattacaatgatgatgtgtttctacttgaatttaatgaatgatgctattatgcttaatgatctactactatatctattcagtca 7056210  T
Q  259 ctgcagagaaactgtaaaggagagtatattgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaacca 354  Q
    ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  7056211 ctgcagagaagttgtaaaggagagtatattgatgtagattccagaaatgagttgtgtttaggagatctcgagtactttcatgaggcaagtaaacca 7056306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 159 - 353
Target Start/End: Original strand, 7027562 - 7027756
Alignment:
Q  159 attgtattttcctgttgattacaatgatgatgtgtttgaacttgaatttaaagagtgatgttattatgcttaatggtctaccattatatcttttcagtca 258  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||||||| |  |||||||||||||||||||||||||||||| ||||||||||||||    
T  7027562 attgtattttcttgttgattacaatgatgatatgtttgtacttgaatttaatggatgatgttattatgcttaatggtctaccattttatcttttcagtca 7027661  T
Q  259 ctgcagagaaactgtaaaggagagtatattgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaacc 353  Q
     |||| ||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  7027662 ttgcaaagaaattgtaaaggagagtacattgatgtagattacagaaatgagttgtgtttaagagatctccggtcctttgatgaggcaagtaaacc 7027756  T

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Target: chr4; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 6994718 - 6994865
Alignment:
Q  253 cagtcactgcagagaaactgtaaaggagagtatattgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaac 352  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  | || | |||||||||||||||    
T  6994718 cagtcactgcagagaaattgtaaaggagagtatgttgatgtagattccagaaatgagttgtgtttaagagatctccgatcctatgatgaggcaagtaaac 6994817  T
Q  353 cattccaattttatgtatacctattataaagaagatact-aagttttg 399  Q
    ||||||||||| || ||||| |||||| |||| |||||| ||||||||    
T  6994818 cattccaatttcatctatacttattattaagatgatactgaagttttg 6994865  T

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Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 7004401 - 7004487
Alignment:
Q  19 ggaaccccatcacaacatacagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctatgcgg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7004401 ggaaccccatcacaacatacagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctatgcgg 7004487  T

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Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 7039645 - 7039731
Alignment:
Q  19 ggaaccccatcacaacatacagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctatgcgg 105  Q
    |||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  7039645 ggaaccccataacaacatacaaagaagataattatcaaatcccatatgctcatggaatgggactcatctcggatgaactctatgcgg 7039731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 353
Target Start/End: Original strand, 7020647 - 7020747
Alignment:
Q  253 cagtcactgcagagaaactgtaaaggagagtatattgatgtagattccggaaatgagttgtgtttaagagatctccagtactttcatgaggcaagtaaac 352  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||  |||||||||||||| || |||||||| || |||| |||||||||||||||    
T  7020647 cagtcactgcagagaaattgtaaaggagagtatattcatgtagattccaaaaatgagttgtgttcaaaagatctccggtcctttgatgaggcaagtaaac 7020746  T
Q  353 c 353  Q
    |    
T  7020747 c 7020747  T

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Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 7027250 - 7027325
Alignment:
Q  30 acaacatacagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctatgcgg 105  Q
    |||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  7027250 acaacacacaaagaagataattatcaaatccagtatgctcatggaatgggactcatctctgatgaactttatgcgg 7027325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 7047038 - 7047113
Alignment:
Q  30 acaacatacagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctatgcgg 105  Q
    |||||||||| |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  7047038 acaacatacaaagaagataactatcaaatccagtatgctcatggaatgggactcatctctgatgaactttatgcgg 7047113  T

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Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 7013950 - 7014036
Alignment:
Q  19 ggaaccccatcacaacatacagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctatgcgg 105  Q
    |||||||| | ||||||| || |||| ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  7013950 ggaaccccttaacaacattcaaagaacaaaattatcaaatcccatatgctcatggaatggggctcatttctgatgaactctatgcgg 7014036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 7020326 - 7020408
Alignment:
Q  19 ggaaccccatcacaacatacagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctat 101  Q
    |||||||| | |||||| ||| |||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7020326 ggaacccctttacaacacacaaagaatataattatcgaatccaatatgctcatggaatgggactcatctctgatgaactctat 7020408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 7053011 - 7053097
Alignment:
Q  19 ggaaccccatcacaacatacagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctatgcgg 105  Q
    |||||||| | ||| |||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  7053011 ggaaccccttaacatcatatagagaagataattatcgaattcaatatgctcatggaatgggactcatctctgatgaactgtatgcgg 7053097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 6994522 - 6994608
Alignment:
Q  19 ggaaccccatcacaacatacagagaagaaaattatcaaatccaatatgctcatggaatgggactcatctctgatgaactctatgcgg 105  Q
    ||||||| || |||||| |||||||| |||| |||||||||| || | ||||||||||||||||||| ||||||||||| |||||||    
T  6994522 ggaaccctataacaacacacagagaaaaaaactatcaaatcccatttactcatggaatgggactcatttctgatgaactttatgcgg 6994608  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 5859195 - 5859232
Alignment:
Q  65 tgctcatggaatgggactcatctctgatgaactctatg 102  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  5859195 tgctcatggaatgggactcatatctgatgaactatatg 5859232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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