View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_low_8 (Length: 407)
Name: NF15535_low_8
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 41604299 - 41604681
Alignment:
| Q |
1 |
attgaattgacaagtttatccctactgaccaataccatacaactcacaacttaataa-taatatttagtttgcagaaaaactcaaagcaaatcaagnnnn |
99 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41604299 |
attgaattgacaagcttatccctactgaccaataccatacaactcacaacttaataaataatatttagtttgcagaaaaactcaaagcaaatcaagaaag |
41604398 |
T |
|
| Q |
100 |
nnnttaaaatactggtttcttctctcggtttattttattttgaagaaaataacagnnnnnnn-cacgaggtaaaacaactttgatgactcaatcatgatg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41604399 |
aaattaaaatactggtttcttctctcggtttattttattttgaagaaaataacagaaaaaaaacacgaggtaaaacaactttgatgactcaatcatgata |
41604498 |
T |
|
| Q |
199 |
cgatactttcttcaaactcgatatcaaatctattgattgattaataggaggcaccagttcatgatgcaatatttaactgagggtcacatctatttcttnn |
298 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41604499 |
cgatactttcttcaaactcggtatcaaatctattgattgattaataggaggcaccagttcatgatgcaatatttaactgagggtcacatctatttcttaa |
41604598 |
T |
|
| Q |
299 |
nnnnnttattcgtacatgttttgattgatggtgaatttgacgaaatcacggtatgatgaagtcggctaataacactataatcc |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41604599 |
aaaaattattcgtacatgttttgattgatggtgaatttgacgaaatcacggtatgatgaagtcggctaataacactataatcc |
41604681 |
T |
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