View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15535_low_9 (Length: 405)

Name: NF15535_low_9
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15535_low_9
NF15535_low_9
[»] chr3 (7 HSPs)
chr3 (16-394)||(3593646-3594025)
chr3 (228-308)||(18344667-18344747)
chr3 (232-308)||(49821248-49821324)
chr3 (102-167)||(18344548-18344613)
chr3 (311-344)||(18344767-18344800)
chr3 (252-308)||(4335113-4335168)
chr3 (312-348)||(49821192-49821228)
[»] chr7 (1 HSPs)
chr7 (100-391)||(32617889-32618182)
[»] chr6 (1 HSPs)
chr6 (16-190)||(21445871-21446046)
[»] chr5 (2 HSPs)
chr5 (252-308)||(20404134-20404189)
chr5 (252-308)||(34993207-34993262)
[»] chr1 (1 HSPs)
chr1 (252-308)||(41772105-41772160)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 3594025 - 3593646
Alignment:
Q  16 atgaacatcatatgattttgctgcaaactatcatatttttcaaaaaatattaggcaacatacaagcccactcaatcaacattttctgcaagaaattaata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3594025 atgaacatcatatgattttgctgcaaactatcatatttttcaaaaaatattaggcaacatacaagcctactcaatcaacattttctgcaagaaattaata 3593926  T
Q  116 tcgaaatgagttatttattttgttgaggatttatgtcttaaaccaattagtaatttagtaattctcatagtttacttacttgtgtctcttttc-tttgat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3593925 tcgaaatgagttatttattttgttgatgatttatgtcttaaaccaattagtaatttagtaattctcatagtttacttacttgtgtctcttttcttttgat 3593826  T
Q  215 tgtaattcaatgaagacaagaactccaatcaactatcctgcaataacatttctagatcaaaaaattgtagttgaatataaatacaaataatgaaatggta 314  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593825 tgtagttcaatgaagacaagaactccaatcaactatcctgcaataacatttctagatcaaaaaattgtagttgaatataaatacaaataatgaaatggta 3593726  T
Q  315 catgttagataaagaaaagagtaaattttagacactataaacatcaagtgaacttgtagatctgaaaagttgttcataac 394  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593725 catgttaaataaagaaaagagcaaattttagacactataaacatcaagtgaacttgtagatctgaaaagttgttcataac 3593646  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 18344667 - 18344747
Alignment:
Q  228 agacaagaactccaatcaactatcctgcaataacatttctagatcaaaaaattgtagttgaatataaatacaaataatgaa 308  Q
    |||||||||||||| ||| || ||||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||||    
T  18344667 agacaagaactccattcacctttcctggaataacatttgtagatcaaaaaattttagttgaagataaatacaaataatgaa 18344747  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 49821324 - 49821248
Alignment:
Q  232 aagaactccaatcaactatcctgcaataacatttctagatcaaaaaattgtagttgaatataaatacaaataatgaa 308  Q
    |||||||||| ||| || ||||| ||||| |||| ||||||||||  || |||||||  ||||||||||||||||||    
T  49821324 aagaactccattcacctttcctggaataagatttgtagatcaaaattttttagttgatgataaatacaaataatgaa 49821248  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 18344548 - 18344613
Alignment:
Q  102 gcaagaaattaatatcgaaatgagttatttattttgttgaggatttatgtcttaaaccaattagta 167  Q
    |||||||||||| |   ||||| || ||||||||||||||||||||||||  ||||| ||||||||    
T  18344548 gcaagaaattaacacttaaatgggtcatttattttgttgaggatttatgtactaaactaattagta 18344613  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 18344767 - 18344800
Alignment:
Q  311 ggtacatgttagataaagaaaagagtaaatttta 344  Q
    |||||||||||||||| |||||||||||||||||    
T  18344767 ggtacatgttagataatgaaaagagtaaatttta 18344800  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 4335168 - 4335113
Alignment:
Q  252 ctgcaataacatttctagatcaaaaaattgtagttgaatataaatacaaataatgaa 308  Q
    |||||| ||||| |||||||||||| || |||||| || ||||||||||||||||||    
T  4335168 ctgcaaaaacatatctagatcaaaatat-gtagttaaagataaatacaaataatgaa 4335113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 49821228 - 49821192
Alignment:
Q  312 gtacatgttagataaagaaaagagtaaattttagaca 348  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  49821228 gtacatgttagataatgaaatgagtaaattttagaca 49821192  T

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Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 100 - 391
Target Start/End: Original strand, 32617889 - 32618182
Alignment:
Q  100 ctgcaagaaattaatatcgaaatgagttatttattttgttgaggatttatgtcttaaaccaattagtaatttagtaattctcatagtttacttacttgtg 199  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||| |||| |||||||||||||  |||||||||||| |||||||||| ||| ||||    
T  32617889 ctgcaagaaattaatactgaaatgagtcatttattttgttgaggattgatgtattaaaccaattagagatttagtaattcccatagtttacatacctgtg 32617988  T
Q  200 tctcttttctttgattgtaattcaatgaag--acaagaactccaatcaactatcctgcaataacatttctagatcaaaaaattgtagttgaatataaata 297  Q
    ||||||||||||| ||  |  || ||||||  |||| ||||||| |||||| || ||||| ||||||||||||| |||||||||||||||||| ||||||    
T  32617989 tctcttttctttgttttcagatcgatgaagggacaaaaactccattcaactttcatgcaacaacatttctagataaaaaaattgtagttgaatgtaaata 32618088  T
Q  298 caaataatgaaatggtacatgttagataaagaaaagagtaaattttagacactataaacatcaagtgaacttgtagatctgaaaagttgttcat 391  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||    
T  32618089 caaataatgaaaaggtacatgtcagataaagaaaagagtaaattttagacactttaaacatcaaatgaacttgtatatttgaaaagttgttcat 32618182  T

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Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 21446046 - 21445871
Alignment:
Q  16 atgaacatcatatgattttgctgcaaactatcatatttttcaaaaaata-ttaggcaacatacaagcccactcaatcaacattttctgcaagaaattaat 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21446046 atgaacgtcatatgattttgctgcaaactatcatatttttcaaaaaaaaattaggcaacatacaagcccactcaatcaacatttcctgcaagaaattaat 21445947  T
Q  115 atcgaaatgagttatttattttgttgaggatttatgtcttaaaccaattagtaatttagtaattctcatagtttac 190  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21445946 atcgaaatgagttatttattttgttgaggatttatgtcttaaacgaattagtaatttagtaattctcatagtttac 21445871  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 20404134 - 20404189
Alignment:
Q  252 ctgcaataacatttctagatcaaaaaattgtagttgaatataaatacaaataatgaa 308  Q
    |||||| ||||| |||||||||||| || |||||| || ||||||||||||||||||    
T  20404134 ctgcaaaaacatatctagatcaaaatat-gtagttaaagataaatacaaataatgaa 20404189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 34993262 - 34993207
Alignment:
Q  252 ctgcaataacatttctagatcaaaaaattgtagttgaatataaatacaaataatgaa 308  Q
    |||||| ||||| |||||||||||| || |||||| || ||||||||||||||||||    
T  34993262 ctgcaaaaacatatctagatcaaaatat-gtagttaaagataaatacaaataatgaa 34993207  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 41772160 - 41772105
Alignment:
Q  252 ctgcaataacatttctagatcaaaaaattgtagttgaatataaatacaaataatgaa 308  Q
    |||||| ||||| |||||||||||| || |||||| || ||||||||||||||||||    
T  41772160 ctgcaaaaacatatctagatcaaaatat-gtagttaaagataaatacaaataatgaa 41772105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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