View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_high_1 (Length: 963)
Name: NF15536_high_1
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 22043748 - 22043423
Alignment:
| Q |
17 |
cagaaatattatgctcggttaggaaacaagtggtgtgtatggaatgatgaaggattccatactgtcagattcaaccaagactaccattatcatctgttaa |
116 |
Q |
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| T |
22043748 |
cagaaatattatgctcggttaggaaacaagtggtgtgtatggaatgatgaaggattccatactgtcaaattcaaccaagactaccattatcctctgttaa |
22043649 |
T |
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| Q |
117 |
caaaaggatggaacaaaataaaattgcattatcaattttctgataatgttgatattgtcttatcttactatggaagtaannnnnnngcagttaaatcttt |
216 |
Q |
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| T |
22043648 |
caaaaggatggaacaaaataaaattgcattatcaatttcctgataatgttgatgttgtcttatcttactatggaagtagtttttttgcacttaaatcttt |
22043549 |
T |
|
| Q |
217 |
caatactctaaactccacatcacaaatcccatattttcatagtcgaaatctagatcctgctgtagcaatttactttgacgtcactctaactcaaaatatc |
316 |
Q |
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| T |
22043548 |
caatactctaaactccacatcacaaatcccagattttcatagtcgaaatctagatcctgctgtagcaatttcctttgacgtcactctaactcaaaatatc |
22043449 |
T |
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| Q |
317 |
atggacgaaatgtctttagttacgta |
342 |
Q |
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| T |
22043448 |
atggacgaaatgtctttagttacgta |
22043423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 607 - 813
Target Start/End: Complemental strand, 22043085 - 22042879
Alignment:
| Q |
607 |
tcaagtttataaattagtaccatgatttagtaatatttttattttgtaaacaatgtctttcatgaaaattccctatcttgccttttacatcttataaata |
706 |
Q |
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| T |
22043085 |
tcaagtttataaatttgtaccatgatttagtaatattttaaatttgtaaacaatgtctttaatgaaaattccctatcttaccttttacatcttataaaaa |
22042986 |
T |
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| Q |
707 |
ttattgcattcaaatattaactatagacataccaatataaggaaacgtatgatatattgcagtcaaactaaaactgttggaaatttaattcaattggaaa |
806 |
Q |
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| T |
22042985 |
ttattgcattcaaatattaactatagacataccaatataatgaaacgtatgatatattgcagtcaaactaaaactgttggaaatctaaatcaattggaaa |
22042886 |
T |
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| Q |
807 |
gagatat |
813 |
Q |
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| T |
22042885 |
gacatat |
22042879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 424 - 508
Target Start/End: Complemental strand, 22043343 - 22043259
Alignment:
| Q |
424 |
actataccagaagatttcgccaactatatcaatcaaggatttcctcatcaactaattacattgtgcggtgataacgattgtgtaa |
508 |
Q |
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| T |
22043343 |
actataccagaagattttgccaactatatcaatcaaggatttcctcatcaactaattacattgtgcggtgataacgattgtgtaa |
22043259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 512 - 590
Target Start/End: Complemental strand, 22043212 - 22043134
Alignment:
| Q |
512 |
tcaagtaaactctccattaggctggaaatctttttcaatctccaacaactttaacacaaatgacattataaggttcaga |
590 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
22043212 |
tcaactaaactctccattaggctggaaatctttttcaatctccaacaattttaacacaaatgacattatacggttcaga |
22043134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 894 - 963
Target Start/End: Complemental strand, 22042876 - 22042807
Alignment:
| Q |
894 |
atgcttattcctctgtcattcctgctccaacttttattccatctcacatatgcaacttgggttttctctc |
963 |
Q |
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| T |
22042876 |
atgcttattcctctgccattcctgctccaacttttattccatctcacatatgcaacttggcttttctctc |
22042807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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