View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_high_13 (Length: 224)
Name: NF15536_high_13
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_high_13 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37119127 - 37119332
Alignment:
| Q |
1 |
ggaactccccataacttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgtatatccaatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119127 |
ggaactccccataacttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgtatatccaatcc |
37119226 |
T |
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| Q |
101 |
acttatgctcactactattagcccaataagctgaaattccaattgaagatccaataatcaacaaaatacacacaatgagatttacttggttcctttttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119227 |
acttatgctcactactattagcccaataagctgaaattccaattgaagatccaataatcaacaaaatacacacaatgagatttacttggttcctttttgt |
37119326 |
T |
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| Q |
201 |
agttac |
206 |
Q |
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|||||| |
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| T |
37119327 |
agttac |
37119332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37110875 - 37111077
Alignment:
| Q |
1 |
ggaactccccataacttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgtatatccaatcc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37110875 |
ggaactccccatagtttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgcgtatccaatcc |
37110974 |
T |
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| Q |
101 |
acttatgctcactactattagcccaataagctgaaattccaattgaagatccaataatcaacaaaatacacacaatgagatttacttggttcctttttgt |
200 |
Q |
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| T |
37110975 |
atccatgctc---actgttagcccaagaagctgaaagtccaattgaagatccaataatcaacacaagacacacaatgagatttacttggttcccttttgt |
37111071 |
T |
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| Q |
201 |
agttac |
206 |
Q |
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|||||| |
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| T |
37111072 |
agttac |
37111077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 29258748 - 29258661
Alignment:
| Q |
2 |
gaactccccataacttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgt |
89 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| || || |||||||||||||||||||| ||||| |
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| T |
29258748 |
gaactccccataatttaggcttctttgccattggaacacaaagccaaagaccaccggttccaaaaaaccacaatggaacaaaaattgt |
29258661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 3064 - 2991
Alignment:
| Q |
16 |
ttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgt |
89 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| || || |||||||||||||||||||| ||||| |
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| T |
3064 |
ttaggcttctttgccattggaacacaaagccaaagaccaccggttccaaaaaaccacaatggaacaaaaattgt |
2991 |
T |
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