View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_high_5 (Length: 475)
Name: NF15536_high_5
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 6 - 456
Target Start/End: Complemental strand, 35354728 - 35354268
Alignment:
| Q |
6 |
gatggtattgttcatatcgaatttggaatcaggggtcaggtatgtatatatgcatcactcttttt--------------gttgcatgaatccaaacacac |
91 |
Q |
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| T |
35354728 |
gatggtattgttcatatcgaatttggaatcaggggtcaggtatgtatatatgcatcactctttttcattgcttctttttgttgcatgaatccaaacacac |
35354629 |
T |
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| Q |
92 |
aataagtgcttttgttcattaaaatgtaggatgggaatgagcagcatttcaaagtgaaccaggacaagttcttgataacagcatttcaacagtactgtaa |
191 |
Q |
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| T |
35354628 |
aataagtgcttttgttcattaaaatgtaggatgggaatgagcagcatttcaaagtgaaccaggacaagttcttgataacagcatttcaacagtactgtaa |
35354529 |
T |
|
| Q |
192 |
aaagatgaaattgcaatatgccaccatcaactttctgcttgatgagaaatctattcaaggaaatcgtcaaacaccaaagatggttagtttcttcttgctt |
291 |
Q |
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| T |
35354528 |
aaagatgaaattgcaatatgccaccatcaactttctgcttgatgagaaatctattcaaggaaatcgtcaaacaccaaagatggttagtttcttcttgctt |
35354429 |
T |
|
| Q |
292 |
tctcacattttccttcatttctagaataaaccgaatgttgtaaatagctaaacacattctg-----taaaagctctagaaatattaagtagtttatgtat |
386 |
Q |
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| T |
35354428 |
tctcacattttccttcatttctagaaaaaaccgaatgttgtaaatagctaaacacattctgtaatataaaagctctagaaatattaa---------gtat |
35354338 |
T |
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| Q |
387 |
tttgtgtgtgtttattctctgattcttaatggaaagaaatcctaataatctaaagtttagttgaaagata |
456 |
Q |
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| T |
35354337 |
tttgtgtgtgtttattctccgattcttgatggaaagaaatcctagtaatctaaagtttaattgaaagata |
35354268 |
T |
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