View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_high_8 (Length: 322)
Name: NF15536_high_8
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 208 - 313
Target Start/End: Complemental strand, 49713096 - 49712991
Alignment:
| Q |
208 |
atccctgcaattctttgacaccaagcttgcatttttatcatctgcatacaatgccacaaccgaactcgtttcattttctgcagagcaaccaattgtgttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
49713096 |
atccctgcaattctttgacaccaagcttgcatttttatcatcgccatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgttc |
49712997 |
T |
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| Q |
308 |
ctttgc |
313 |
Q |
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|||||| |
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| T |
49712996 |
ctttgc |
49712991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 208 - 313
Target Start/End: Complemental strand, 49655574 - 49655469
Alignment:
| Q |
208 |
atccctgcaattctttgacaccaagcttgcatttttatcatctgcatacaatgccacaaccgaactcgtttcattttctgcagagcaaccaattgtgttc |
307 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
49655574 |
atccctgcaattctttgacaccaggcttgcatttttatcatcatcatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgttc |
49655475 |
T |
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| Q |
308 |
ctttgc |
313 |
Q |
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|||||| |
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| T |
49655474 |
ctttgc |
49655469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 49655784 - 49655654
Alignment:
| Q |
81 |
gagagagaaacctggaggacattttgcagcatgaactaaatcagtacagtaacacttgaaagtgtatgcaactttatcaaagccacaccttcctccggtg |
180 |
Q |
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|||||| ||||||| | ||||||||||| ||||||| |||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||| ||| |
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| T |
49655784 |
gagagacaaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacttgaaattgtatacatctttatcaaagccacaccttcctccagtg |
49655685 |
T |
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| Q |
181 |
ctgttacacgcattgcaatcactagcaatcc |
211 |
Q |
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||||||||| |||||||||||||||| |||| |
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| T |
49655684 |
ctgttacactcattgcaatcactagctatcc |
49655654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 49713306 - 49713176
Alignment:
| Q |
81 |
gagagagaaacctggaggacattttgcagcatgaactaaatcagtacagtaacacttgaaagtgtatgcaactttatcaaagccacaccttcctccggtg |
180 |
Q |
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|||||| ||||||| | ||||||||||| ||||||| |||||| ||||||||| ||||| ||||| || ||||||||||||||||||||||||| ||| |
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| T |
49713306 |
gagagacaaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacaccttcctccagtg |
49713207 |
T |
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| Q |
181 |
ctgttacacgcattgcaatcactagcaatcc |
211 |
Q |
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||||||||| |||||||||||||||| |||| |
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| T |
49713206 |
ctgttacactcattgcaatcactagctatcc |
49713176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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