View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_low_10 (Length: 332)
Name: NF15536_low_10
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 27 - 323
Target Start/End: Original strand, 41753266 - 41753562
Alignment:
| Q |
27 |
cactcccaaacccaacctttagtcatagttgcatgaagaatacaaatatgataagagagagatgagagaatatgtgattggaaaataattattaagtgtt |
126 |
Q |
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| T |
41753266 |
cactcccaaacccaacatttagtcatagttgcatgaagaatataaatatgataagagagagatgagagaatatgtgattggaaaataattattaagtgtt |
41753365 |
T |
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| Q |
127 |
tcaataagatgcgtaacattagcatgaggaatacaaatctacataactatcaaaagttttcatctaggattaagttgaccaagagaagattgcaacaatg |
226 |
Q |
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| T |
41753366 |
tcaataagatgcgtaacattagcatgaggaatacaaatctacataactatcaaaagttttcatccatgattaagttgaccaagagaagattgcaacaatg |
41753465 |
T |
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| Q |
227 |
tgtagacatcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctccggtttatcacatacactatatttcttttcttcttt |
323 |
Q |
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| T |
41753466 |
tatagacagcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctctggtttctcacatacactatatttcttttctccttt |
41753562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 41757818 - 41757941
Alignment:
| Q |
195 |
attaagttgaccaagagaagattgcaacaatgtgtagacatcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctccggttta |
294 |
Q |
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| T |
41757818 |
attaagttgatggagagaagattgcaacagtgtgtagacagcatgccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttc |
41757917 |
T |
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| Q |
295 |
tcacatacactatatttcttttct |
318 |
Q |
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| T |
41757918 |
tcacataaactgtatttcttttct |
41757941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 41747115 - 41747192
Alignment:
| Q |
238 |
tgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctccggtttatcacatacactatatttcttt |
315 |
Q |
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| T |
41747115 |
tgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggtttatcacatacactatatttcttt |
41747192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 41732412 - 41732525
Alignment:
| Q |
199 |
agttgaccaagagaagattgcaacaatgtgtagacatcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctccggtttatcac |
298 |
Q |
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| T |
41732412 |
agttgaccgagagaagactgcaacattaggtaaacttcataccaaccattttgagaagggtgaactgtgtcccaaaagagtgaagactcaagcttctcac |
41732511 |
T |
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| Q |
299 |
atacactatatttc |
312 |
Q |
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| T |
41732512 |
atacactatatttc |
41732525 |
T |
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