View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_low_12 (Length: 313)
Name: NF15536_low_12
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 34166849 - 34167152
Alignment:
| Q |
1 |
gcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgtaatttatttcttgagt |
100 |
Q |
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| T |
34166849 |
gcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgtaatttatttcttgagt |
34166948 |
T |
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| Q |
101 |
gaaattagaaggttgtcgtgatcctactagagaaatggactnnnnnnnngcttataaagggtagacaatcctcagcatttaagccagtttgtcggggacg |
200 |
Q |
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| T |
34166949 |
gaaattagaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcatttaagccagtttgtcggggacg |
34167048 |
T |
|
| Q |
201 |
acttagactcaaacctaggatgatattataacctgataaatgtgnnnnnnnnacccatcagtaaaggtacaaactaaaatgttgcgtcctaggcatgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34167049 |
acttagactcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaatgttgcgtcctaggcatgatg |
34167148 |
T |
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| Q |
301 |
atgt |
304 |
Q |
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|||| |
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| T |
34167149 |
atgt |
34167152 |
T |
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