View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_low_13 (Length: 300)
Name: NF15536_low_13
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 22043748 - 22043478
Alignment:
| Q |
17 |
cagaaatattatgctcggttaggaaacaagtggtgtgtatggaatgatgaaggattccatactgtcagattcaaccaagactaccattatcatctgttaa |
116 |
Q |
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| T |
22043748 |
cagaaatattatgctcggttaggaaacaagtggtgtgtatggaatgatgaaggattccatactgtcaaattcaaccaagactaccattatcctctgttaa |
22043649 |
T |
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| Q |
117 |
caaaaggatggaacaaaataaaattgcattatcaattttctgataatgttgatattgtcttatcttactatggaagtaannnnnnngcagttaaatcttt |
216 |
Q |
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| T |
22043648 |
caaaaggatggaacaaaataaaattgcattatcaatttcctgataatgttgatgttgtcttatcttactatggaagtagtttttttgcacttaaatcttt |
22043549 |
T |
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| Q |
217 |
caatactctaaactccacatcacaaatcccatattttcatagtcgaaatctagatcctgctgtagcaattt |
287 |
Q |
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| T |
22043548 |
caatactctaaactccacatcacaaatcccagattttcatagtcgaaatctagatcctgctgtagcaattt |
22043478 |
T |
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