View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15536_low_16 (Length: 254)

Name: NF15536_low_16
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15536_low_16
NF15536_low_16
[»] chr4 (1 HSPs)
chr4 (1-50)||(15556493-15556542)
[»] chr3 (6 HSPs)
chr3 (2-44)||(46480278-46480320)
chr3 (2-44)||(46491191-46491233)
chr3 (11-44)||(46506843-46506876)
chr3 (2-38)||(47413797-47413833)
chr3 (2-44)||(46474408-46474450)
chr3 (2-34)||(46236395-46236427)


Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15556493 - 15556542
Alignment:
Q  1 cacaatcctctttgttggacaggtgctcaatcctcttgctgggtaatcat 50  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  15556493 cacaatcctctttgttggacaggtgcttaatccttttgctgggtaatcat 15556542  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 46480278 - 46480320
Alignment:
Q  2 acaatcctctttgttggacaggtgctcaatcctcttgctgggt 44  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  46480278 acaatcatctttgttggacaggtgctcaatcctcttgctgggt 46480320  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 46491191 - 46491233
Alignment:
Q  2 acaatcctctttgttggacaggtgctcaatcctcttgctgggt 44  Q
    |||||| ||||||||||||||||| ||||||||||||||||||    
T  46491191 acaatcatctttgttggacaggtgttcaatcctcttgctgggt 46491233  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 46506876 - 46506843
Alignment:
Q  11 tttgttggacaggtgctcaatcctcttgctgggt 44  Q
    ||||||||||||||||||||||||||||||||||    
T  46506876 tttgttggacaggtgctcaatcctcttgctgggt 46506843  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 47413833 - 47413797
Alignment:
Q  2 acaatcctctttgttggacaggtgctcaatcctcttg 38  Q
    |||||||||||||||||||| ||||||||||||||||    
T  47413833 acaatcctctttgttggacatgtgctcaatcctcttg 47413797  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 46474408 - 46474450
Alignment:
Q  2 acaatcctctttgttggacaggtgctcaatcctcttgctgggt 44  Q
    |||||| ||||||||||||||||||| |||||||||| |||||    
T  46474408 acaatcatctttgttggacaggtgcttaatcctcttgatgggt 46474450  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 46236427 - 46236395
Alignment:
Q  2 acaatcctctttgttggacaggtgctcaatcct 34  Q
    ||||||||||||| |||||||||||||||||||    
T  46236427 acaatcctctttgctggacaggtgctcaatcct 46236395  T

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