View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_low_17 (Length: 252)
Name: NF15536_low_17
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_low_17 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 2136432 - 2136200
Alignment:
| Q |
20 |
atgcaacaattcatctggattttatattatttaattatttataaaatgtaggcaatgcttatttttctttgtagttctatggatttcgcgaaggattggg |
119 |
Q |
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| T |
2136432 |
atgcaacaattcatttggattttatattatttaattatttataaaatgtaggcaatgcttatgtttctttgtagttctatggatttcgcgaaggattggg |
2136333 |
T |
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| Q |
120 |
gaatctaacacaaaaggaggctgagtatcgagcattgattttaggtctgaaacaagcgatcatgaaaggatttaagaacattacggtcaaaggagaatcc |
219 |
Q |
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| T |
2136332 |
gaatctaacacaaaaggaggctgagtatcgagcattgattttaggtctgaaacaagcgatcatgaaaggatttaagaacattacggtcaaaggagaatcc |
2136233 |
T |
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| Q |
220 |
aagcttgttacaaatcaggtttgttttattaca |
252 |
Q |
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| T |
2136232 |
aagtttgttacaaatcaggtttgttttattaca |
2136200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 2097887 - 2098054
Alignment:
| Q |
77 |
cttatttttctttgtagttctatggatttcgcgaaggattggggaatctaacacaaaaggaggctgagtatcgagcattgattttaggtctgaaacaagc |
176 |
Q |
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| T |
2097887 |
cttatgtttctttgtagctctatcgattccgcgaaggacttggttatcaaacaaataatgttgctgagtatcgcgcattgattttaggactgaaacaagc |
2097986 |
T |
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| Q |
177 |
gatcatgaaaggatttaagaacattacggtcaaaggagaatccaagcttgttacaaatcaggtttgtt |
244 |
Q |
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| T |
2097987 |
tgtaaggaaaggatataggaacatcactgtctacggagattccgaacttgttatcaatcaggtatgtt |
2098054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 2106382 - 2106549
Alignment:
| Q |
83 |
tttctttgtagttctatggatttcgcgaaggattggggaatctaacacaaaaggaggctgagtatcgagcattgattttaggtctgaaacaagcgatcat |
182 |
Q |
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| T |
2106382 |
tttctttgtagctctatcgattccgcgaaggacttggttatcaaacaaataatgttgctgagtatcgtgcactgattttaggactgaaacaagctctaag |
2106481 |
T |
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| Q |
183 |
gaaaggatttaagaacattacggtcaaaggagaatccaagcttgttacaaatcaggtttgttttatta |
250 |
Q |
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| T |
2106482 |
gaaaggatataggaacatcactgtctacggagactccgaacttgttatcaatcaggtctgttctatta |
2106549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 2088280 - 2088432
Alignment:
| Q |
23 |
caacaattcatctggattttatattatttaattatttataaaatgtaggcaatgcttatttttctttgtagttctatggatttcgcgaaggattggggaa |
122 |
Q |
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| T |
2088280 |
caacaattcatctgagctttatattatatg-ttatttataaaatgtagctaacccttatgtttctttgtagctctatcgattccgtgaaggattaggcta |
2088378 |
T |
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| Q |
123 |
tctaacacaaaaggaggctgagtatcgagcattgattttaggtctgaaacaagc |
176 |
Q |
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| T |
2088379 |
ccaaacaaataatgttgctgagtatcgcgctttgattttaggaatgaaacaagc |
2088432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 2054063 - 2054167
Alignment:
| Q |
139 |
gctgagtatcgagcattgattttaggtctgaaacaagcgatcatgaaaggatttaagaacattacggtcaaaggagaatccaagcttgttacaaatcagg |
238 |
Q |
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| T |
2054063 |
gctgagtaccgcgctttgatattgggactgaaacaagctatcaataaaggatttaagaacatcagtgtgcaaggagactccaaccttgttatcaatcagg |
2054162 |
T |
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| Q |
239 |
tttgt |
243 |
Q |
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| T |
2054163 |
tttgt |
2054167 |
T |
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