View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15536_low_19 (Length: 208)

Name: NF15536_low_19
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15536_low_19
NF15536_low_19
[»] chr3 (3 HSPs)
chr3 (19-186)||(51418409-51418576)
chr3 (19-161)||(51413356-51413498)
chr3 (89-158)||(51416472-51416541)
[»] chr7 (1 HSPs)
chr7 (50-120)||(29323690-29323760)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 51418409 - 51418576
Alignment:
Q  19 catagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtatttcatttcaccgttggagtat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51418409 catagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtattttatttcaccgttggagtat 51418508  T
Q  119 cagttcagctgtagcagcagtccaccgcgtctctctcgtggtgtaaacagtagtaggaggaagctatt 186  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51418509 cagttcagctgtagcagcagtccaccgcgtctctctcgtggtgcaaacagtagtaggaggaagctatt 51418576  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 51413356 - 51413498
Alignment:
Q  19 catagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtatttcatttcaccgttggagtat 118  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51413356 catagggaaagcattgaacagcgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtat 51413455  T
Q  119 cagttcagctgtagcagcagtccaccgcgtctctctcgtggtg 161  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||    
T  51413456 cagttcagctgtagtagcagtccacctcgtctctctcgcggtg 51413498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 51416472 - 51416541
Alignment:
Q  89 gatatgtatttcatttcaccgttggagtatcagttcagctgtagcagcagtccaccgcgtctctctcgtg 158  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||| ||||||    
T  51416472 gatatgtatttcgtttcaccgttggaatatcagttcagctgtagcagcaatccaccgcatctcactcgtg 51416541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 29323690 - 29323760
Alignment:
Q  50 aagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtatttcatttcaccgttggagtatca 120  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29323690 aagcaccacgaagcactcatgtgccgtccacgtgatgctgatatgtatttcgtttcaccgttggagtatca 29323760  T

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