View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_low_2 (Length: 566)
Name: NF15536_low_2
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 3 - 551
Target Start/End: Original strand, 40547833 - 40548381
Alignment:
| Q |
3 |
cataggcaacatggaaaaaatatatcaagcgcacagactgaaccttcggatggagtagatgcacttactaaactttgtagaattttatcatgttataatc |
102 |
Q |
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| T |
40547833 |
cataggcaacatggaaaaaatatatcaagcgcacagactgaaccttcggatggagtagatgcacttactaaactttgtagaattttatcatgttataatc |
40547932 |
T |
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| Q |
103 |
gaaatggttcaacccacgacgcaagttttgactcgtttccaccaaaacttgtcaaattgctgaagcatgacactgaccctgatgtaatcttgttgtctgc |
202 |
Q |
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| T |
40547933 |
gaaatggttcaacccgcgacacaagttttgactcatttccaccaaaacttgtcaaattgctgaagcatgacactgaccctgatgtaatcttgttgtctgc |
40548032 |
T |
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| Q |
203 |
gagggtcatcacctatctatgtgagaagattcctgaattagctggtttatttgttagccttgctgctcttcctgttttatgtcaaagattacatacattt |
302 |
Q |
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| T |
40548033 |
gagggtcatcacctatctatgtgagaagattcctgaattagctggtttatttgttagccttgatgctcttcctgttttatgtcaaagattacatacattt |
40548132 |
T |
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| Q |
303 |
gagtatcaagaagtagccgaacaggtcttcactttggtcctagctaactaattttcttatattaaaaatgttaacaacgcacttttcaacactcttttca |
402 |
Q |
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| T |
40548133 |
gagtatcaagaagtagccgaacaggtcttcactttggtcctagctaactaattttcttatattaaaaatgttaacaacgcacttttcaacactcttttca |
40548232 |
T |
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| Q |
403 |
acgctttctcctgatagttgaaattgagtcctactccaatggagtgtgttcaaaagagaatgttaagagggtgttgctagtacctttatgttcatttttc |
502 |
Q |
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| T |
40548233 |
acgctttctcctgatagttgatattgagtcctactccaatggagtgtgttcaagagagaatgttaagagtgtgttgctagtacctttatgttcatttttc |
40548332 |
T |
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| Q |
503 |
atctcaaatagaattacaggaatttaagattactattgatgttgcattt |
551 |
Q |
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| T |
40548333 |
atctcaaatagaattacaggaatttaagattactattgatgttgcattt |
40548381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 492 - 551
Target Start/End: Complemental strand, 40546818 - 40546759
Alignment:
| Q |
492 |
gttcatttttcatctcaaatagaattacaggaatttaagattactattgatgttgcattt |
551 |
Q |
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| T |
40546818 |
gttcaattttcatctcaaatagaaatacaggaatttaagaatattattgatgttgcattt |
40546759 |
T |
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