View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_low_4 (Length: 480)
Name: NF15536_low_4
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Original strand, 49425870 - 49426326
Alignment:
| Q |
12 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49425870 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatc |
49425969 |
T |
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| Q |
112 |
tcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagctcccttctca |
211 |
Q |
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| T |
49425970 |
tcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagctcccttctca |
49426069 |
T |
|
| Q |
212 |
ttctcatagcagtatttttcaaaacttatcagacattttagaagtcagttctcagttctcacacattttactctcctatcatgtggtcattcatggaatc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49426070 |
ttctcatagcagtatttttcaaaacttatcagacattttagaagtcagttctcagttctcacacattttactctcctatcatgtggtcattcatggaatc |
49426169 |
T |
|
| Q |
312 |
agaatttagcaaacaactaac---nnnnnnntggataacatagattttgttgaagtaatgaacaagtnnnnnnnnnnggtctaaagttaaaggataattt |
408 |
Q |
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| T |
49426170 |
agaatttagcatacaactaacaaaaaaaaaatggataacatagattttgttgaagtaatgaacaagtaaaaaaaaaaggtctaaagttaaaggataattt |
49426269 |
T |
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| Q |
409 |
ttcttaaacttgtgaactgatacaaaattcaagagcatcaaggttcactattcaaac |
465 |
Q |
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| T |
49426270 |
ttcttaaacttgtgaactgatacaaaattcaagagcatcaaggttcactattcaaac |
49426326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 43363344 - 43363144
Alignment:
| Q |
12 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatc |
111 |
Q |
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||||||||||||||||| |||| ||| || | ||| |||| ||||||||| ||| ||||| ||||||| ||||||||||||||||| |||| || |||| |
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| T |
43363344 |
atgaagttgtaacatga--ttgcaaatgtgcaatggtgaaagcttaagagcataa-aaatgttatcccttatgtcttgaaagttgaatctattaatcatc |
43363248 |
T |
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| Q |
112 |
tcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagctcccttctca |
211 |
Q |
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| T |
43363247 |
tcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaagcttccccaaatgactcattaagacaattcaaaaacttccttctca |
43363150 |
T |
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| Q |
212 |
ttctca |
217 |
Q |
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|||||| |
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| T |
43363149 |
ttctca |
43363144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 49423713 - 49423904
Alignment:
| Q |
12 |
atgaagttgtaacatgacattgccaatatgaattggc-gaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccat |
110 |
Q |
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||||||||||||| ||| ||||| ||| || | |||| ||||| || |||| ||| ||||| ||||||||||||||||||||||||| |||| |||||| |
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| T |
49423713 |
atgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccat |
49423812 |
T |
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| Q |
111 |
ctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagct |
202 |
Q |
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||| || || |||||||| | ||||||||| |||||||| ||| ||||||||| ||||||||||| | ||||||||||||||||||| |
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| T |
49423813 |
ctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagct |
49423904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 49416802 - 49416720
Alignment:
| Q |
193 |
ttcaaaagctcccttctcattctcatagcagtatttttcaaaac-ttatcagacattttagaagtcagttctcagttctcaca |
274 |
Q |
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||||||||||||||| |||||||||| ||||||||||| ||||| |||| |||| | |||||||| ||| ||||||||||||| |
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| T |
49416802 |
ttcaaaagctcccttgtcattctcattgcagtattttttaaaactttattagacttattagaagtgagtactcagttctcaca |
49416720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 43362692 - 43362598
Alignment:
| Q |
281 |
actctcctatcatgtggtcattcatggaatcagaatttagcaaacaactaacnnnnnnntggataacatagattttgttgaagtaatgaacaagt |
375 |
Q |
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| T |
43362692 |
actctcctaccatgcggtcatgcattgaatcataatttagcgcacaactaactaaaaaatggataacatagatttagttgaagtcatgaacaagt |
43362598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 467
Target Start/End: Original strand, 49432497 - 49432566
Alignment:
| Q |
398 |
aaggataatttttcttaaacttgtgaactgatacaaaattcaagagcatcaaggttcactattcaaactg |
467 |
Q |
| |
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|||||||||||||| | ||||||| || |||||||| ||||||| ||||||||||||| | |||||||| |
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| T |
49432497 |
aaggataatttttcctggacttgtgcaccgatacaaagttcaagaacatcaaggttcacaactcaaactg |
49432566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 17640994 - 17641049
Alignment:
| Q |
74 |
tatccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaa |
129 |
Q |
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||||||||| |||||||||||||| |||| |||||| || ||||||||||||||| |
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| T |
17640994 |
tatccctaaattcttgaaagttgaatctatcaaccatgtcctacatttagtttaaa |
17641049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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