View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_low_6 (Length: 440)
Name: NF15536_low_6
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 16843188 - 16842774
Alignment:
| Q |
18 |
tgtacgtgtagagatcagaagcataatttgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccataagcatccagcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843188 |
tgtacgtgtagagatcagaagcataatttgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccataagcatccagcat |
16843089 |
T |
|
| Q |
118 |
tgaattgtaggcttcaagggaaactgagaatacatcaaattgcatcttgtgaacagttcttgacatgtcgctgaagtccttccttttcccataagcatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843088 |
tgaattgtaggcttcaagggaaactgagaatacatcaaattgcatcttgtgaacagttcttgacatgtcgctgaagtccttccttttcccataagcatct |
16842989 |
T |
|
| Q |
218 |
ataatagtattgtaggtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16842988 |
ataatagtattgtaggtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaat |
16842889 |
T |
|
| Q |
318 |
ttggtgaagaagacatcttcaactttagatgtaacatctctgcatctttgaagcgtcccataacactataaatatcgatccttgtacaaacaatgtgctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16842888 |
ttggtgaagaagacatcttcaactttagatgtaacatctctgcatctttgaagcgtcccataacactataaatatcgatccttgtacaaacaatgtgctt |
16842789 |
T |
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| Q |
418 |
gttcagcttcatctc |
432 |
Q |
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|||||||||| |||| |
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| T |
16842788 |
gttcagcttcttctc |
16842774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 24210454 - 24210191
Alignment:
| Q |
18 |
tgtacgtgtagagatcagaagcataatttgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccataagcatccagcat |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24210454 |
tgtacgtgtagagatcagaagcacaatttgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccgtaagcatccagcat |
24210355 |
T |
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| Q |
118 |
tgaattgtaggcttcaagggaaactgagaatacatcaaattgcatcttgtgaacagttcttgacatgtcgctgaagtccttccttttcccataagcatct |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||| |
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| T |
24210354 |
tgaattgtaggcttcaagggaaactgagaatccatcaaattgcatcttgcgaacagttcttgacatgtttctgaagtccttctttttcccataagaatct |
24210255 |
T |
|
| Q |
218 |
ataatagtattgtaggtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctcc |
281 |
Q |
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| T |
24210254 |
ataatagtattgtaggtgatgacatcaaccaagccttgtttcttagccataaaatacaacctcc |
24210191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 279 - 432
Target Start/End: Complemental strand, 24209839 - 24209686
Alignment:
| Q |
279 |
tccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagacatcttcaactttagatgtaacatctctgcatctttgaagcgtcccat |
378 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
24209839 |
tccgcacaacaatgctatatgcaatcatatccaacgaatttggtgaagaagacttcttcaactttagatacaacatctctgcatctttgaagcatcccat |
24209740 |
T |
|
| Q |
379 |
aacactataaatatcgatccttgtacaaacaatgtgcttgttcagcttcatctc |
432 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
24209739 |
gacactataaatatcgatcattgtacaaacaatgtgcttgttcagcttcttctc |
24209686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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