View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15536_low_7 (Length: 425)

Name: NF15536_low_7
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15536_low_7
NF15536_low_7
[»] chr3 (6 HSPs)
chr3 (193-401)||(19434968-19435168)
chr3 (185-401)||(28103769-28103977)
chr3 (185-409)||(28068905-28069116)
chr3 (193-401)||(6911360-6911564)
chr3 (185-409)||(28058480-28058691)
chr3 (232-375)||(11200699-11200834)
[»] chr1 (7 HSPs)
chr1 (193-401)||(47050547-47050747)
chr1 (193-401)||(16100706-16100906)
chr1 (193-401)||(14660026-14660226)
chr1 (193-409)||(29289104-29289312)
chr1 (185-409)||(17653420-17653634)
chr1 (193-401)||(14650235-14650435)
chr1 (193-387)||(19657461-19657649)
[»] chr6 (13 HSPs)
chr6 (193-401)||(25478291-25478491)
chr6 (193-401)||(27527203-27527403)
chr6 (193-400)||(33055601-33055797)
chr6 (195-398)||(28040664-28040859)
chr6 (185-409)||(22013924-22014138)
chr6 (193-299)||(33062984-33063090)
chr6 (193-399)||(27650961-27651160)
chr6 (310-407)||(6952290-6952387)
chr6 (326-401)||(33063205-33063277)
chr6 (194-401)||(15970459-15970657)
chr6 (196-369)||(17355375-17355540)
chr6 (304-401)||(27684088-27684185)
chr6 (304-401)||(27691407-27691504)
[»] chr5 (4 HSPs)
chr5 (185-409)||(5519498-5519712)
chr5 (195-409)||(42785455-42785658)
chr5 (193-372)||(15598659-15598829)
chr5 (310-367)||(27198374-27198431)
[»] chr4 (10 HSPs)
chr4 (193-401)||(4763524-4763727)
chr4 (246-401)||(27561170-27561317)
chr4 (311-401)||(11512835-11512925)
chr4 (185-250)||(27561332-27561397)
chr4 (336-407)||(8164473-8164542)
chr4 (312-368)||(5358666-5358722)
chr4 (193-285)||(11512948-11513039)
chr4 (195-285)||(5358734-5358824)
chr4 (94-140)||(40383358-40383404)
chr4 (246-362)||(54351969-54352078)
[»] chr2 (6 HSPs)
chr2 (185-409)||(44324032-44324246)
chr2 (246-401)||(45332676-45332823)
chr2 (194-275)||(2588117-2588198)
chr2 (185-284)||(808810-808909)
chr2 (193-250)||(45331962-45332019)
chr2 (196-401)||(31713836-31714032)
[»] chr8 (7 HSPs)
chr8 (193-409)||(18982382-18982589)
chr8 (195-409)||(4706677-4706877)
chr8 (310-398)||(26340512-26340602)
chr8 (311-401)||(28603144-28603234)
chr8 (197-299)||(26917464-26917567)
chr8 (185-275)||(15924891-15924982)
chr8 (333-407)||(15925033-15925107)
[»] scaffold0406 (1 HSPs)
scaffold0406 (193-401)||(3615-3812)
[»] scaffold0438 (2 HSPs)
scaffold0438 (195-399)||(7687-7884)
scaffold0438 (310-398)||(10673-10763)
[»] chr7 (4 HSPs)
chr7 (311-387)||(36264288-36264365)
chr7 (185-284)||(28803513-28803613)
chr7 (325-405)||(29467028-29467106)
chr7 (333-401)||(28803653-28803721)
[»] scaffold0007 (1 HSPs)
scaffold0007 (193-401)||(60505-60708)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 193 - 401
Target Start/End: Original strand, 19434968 - 19435168
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  19434968 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 19435067  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    | |||||        |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  19435068 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattat 19435159  T
Q  393 atttttata 401  Q
    |||||||||    
T  19435160 atttttata 19435168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 185 - 401
Target Start/End: Original strand, 28103769 - 28103977
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 284  Q
    ||||| ||||||||||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||    
T  28103769 ttaagcctgatttttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttca 28103868  T
Q  285 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 384  Q
    |||||||||        | |||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||    
T  28103869 cctcttgac--------gacattgagattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgatggtgaa 28103960  T
Q  385 tttattatatttttata 401  Q
    |||||||||||||||||    
T  28103961 tttattatatttttata 28103977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 185 - 409
Target Start/End: Complemental strand, 28069116 - 28068905
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 284  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28069116 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28069017  T
Q  285 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 384  Q
    | |||||||        | |||||||||||||  ||| | ||||||||||||||| ||||||||||||||||||||||||||||||    ||||| |||     
T  28069016 cttcttgac--------gacattgaaattttg--atagtcttatttggtttgatagatttacaaagttttatgaattttcatggta---ctgattgtgag 28068930  T
Q  385 tttattatatttttatatggttact 409  Q
    ||||||||||||||||| |||||||    
T  28068929 tttattatatttttatacggttact 28068905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 193 - 401
Target Start/End: Complemental strand, 6911564 - 6911360
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggttt-cacctcttg 291  Q
    ||||||||||||| ||||| | || || |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||    
T  6911564 gatttttatattctatttggacttgattatctcgattctttttcattataatcgatttatatattttctttaaagttgtggatttggttttcacctcttg 6911465  T
Q  292 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttatta 391  Q
    || ||     | |||||||||| |||||||   ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||  ||||||||||    
T  6911464 acgac-----gacattgaaattctgatatagccttatttggtttgataaaattaccaagttttatgaattttcatggtacacttgattgcgaatttatta 6911370  T
Q  392 tatttttata 401  Q
    ||||||||||    
T  6911369 tatttttata 6911360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 185 - 409
Target Start/End: Complemental strand, 28058691 - 28058480
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 284  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28058691 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28058592  T
Q  285 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 384  Q
    | |||||||        | |||||||||| ||  ||| | ||||||||||||||| ||||||||||||||||||||||||||||||    ||||| |||     
T  28058591 cttcttgac--------gacattgaaattctg--atagtcttatttggtttgatagatttacaaagttttatgaattttcatggta---ctgattgtgag 28058505  T
Q  385 tttattatatttttatatggttact 409  Q
    ||||||||||||||||| |||||||    
T  28058504 tttattatatttttatacggttact 28058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 11200699 - 11200834
Alignment:
Q  232 ttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttg 331  Q
    ||||||||||| ||||||| ||||||  ||||| |||| | ||| |||||||||||||| || |||||        | |||||||||||| | |||||||    
T  11200699 ttttcattatactcgatttatatatttcctttatagttattgatttggtttcacctctttacgacatt--------ggaattttgatatagttttatttg 11200790  T
Q  332 gtttgataaatttacaaagttttatgaattttcatggtatactt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11200791 gtttgataaatttacaaagttttatgaattttcatggtatactt 11200834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 193 - 401
Target Start/End: Complemental strand, 47050747 - 47050547
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  47050747 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 47050648  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    | |||||        |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  47050647 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattat 47050556  T
Q  393 atttttata 401  Q
    |||||||||    
T  47050555 atttttata 47050547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 193 - 401
Target Start/End: Original strand, 16100706 - 16100906
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  16100706 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 16100805  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  16100806 c--------gacattgaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattctcatggtacacttgattgtgaatttattat 16100897  T
Q  393 atttttata 401  Q
    |||||||||    
T  16100898 atttttata 16100906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 193 - 401
Target Start/End: Original strand, 14660026 - 14660226
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14660026 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14660125  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    | |||||        |||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  14660126 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattagaaagttttatgaattttcatggtacacttgattgtgaatttattat 14660217  T
Q  393 atttttata 401  Q
    |||||||||    
T  14660218 atttttata 14660226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 193 - 409
Target Start/End: Complemental strand, 29289312 - 29289104
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    |||| |||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||    
T  29289312 gattgttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttcacctcttga 29289213  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    | |||||        ||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  29289212 cgacatt--------gaaattttgttatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattat 29289121  T
Q  393 atttttatatggttact 409  Q
    ||||||||| |||||||    
T  29289120 atttttatacggttact 29289104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 185 - 409
Target Start/End: Complemental strand, 17653634 - 17653420
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 284  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  17653634 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 17653535  T
Q  285 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 384  Q
    |||||||||        | |||||||||| ||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  17653534 cctcttgac--------gacattgaaattctg--atagtcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 17653445  T
Q  385 tttattatatttttatatggttact 409  Q
     |||||||||||||||| |||||||    
T  17653444 gttattatatttttatacggttact 17653420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 193 - 401
Target Start/End: Original strand, 14650235 - 14650435
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| |  |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14650235 gatttttatattctatttggatttgactatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14650334  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    | |||||        |||||||||||||| | ||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||| ||||||||||||    
T  14650335 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattaaaaagttttatgaattatcatggtacacttgattgtgaatttattat 14650426  T
Q  393 atttttata 401  Q
    |||||||||    
T  14650427 atttttata 14650435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 387
Target Start/End: Complemental strand, 19657649 - 19657461
Alignment:
Q  193 gatttttatattcaatttgaattta-atcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttg 291  Q
    ||||||||||||| ||||| ||||  || || || |||||||||||||||    |||||||||||| ||||||| |||| |||| ||| || |||||||     
T  19657649 gatttttatattctatttggatttctattatttcaattccttttcattatgtgtgatttctatattttctttaaggttgcggatttgggttgacctcttt 19657550  T
Q  292 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatg-gtatacttgattatgaattt 387  Q
    ||||||||  |        |||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||  || |||||||| |||||||    
T  19657549 acaacattggg--------atttcgatataatcttatttggtttgataaatttacaaagttttttgaattttcatgtatacacttgattgtgaattt 19657461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 193 - 401
Target Start/End: Complemental strand, 25478491 - 25478291
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  25478491 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 25478392  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    |        | |||||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||    
T  25478391 c--------gacattgaaattttgatatagtcttatttggtttgataaaattacgaagttttatgaattttcatggtacacttgattgtgaatttattat 25478300  T
Q  393 atttttata 401  Q
    |||||||||    
T  25478299 atttttata 25478291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 193 - 401
Target Start/End: Original strand, 27527203 - 27527403
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  27527203 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 27527302  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  27527303 c--------gacattgaaattttgatatagtcttatttggtttgataaaattagaaagttttatgaattttcatggtacacttgattgtgaatttattat 27527394  T
Q  393 atttttata 401  Q
    |||||||||    
T  27527395 atttttata 27527403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 193 - 400
Target Start/End: Original strand, 33055601 - 33055797
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33055601 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33055700  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    |||        |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||   || ||||||||||||    
T  33055701 caa--------cattgaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacact---ttgtgaatttattat 33055789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 195 - 398
Target Start/End: Original strand, 28040664 - 28040859
Alignment:
Q  195 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 294  Q
    ||||||||||  ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||     
T  28040664 tttttatattatatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttgacg 28040763  T
Q  295 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 394  Q
    |||||        |||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  28040764 acatt--------gaaattttgatatagtcttatttagtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattatat 28040855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 185 - 409
Target Start/End: Original strand, 22013924 - 22014138
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 284  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  22013924 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 22014023  T
Q  285 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 384  Q
    |||||||||        | |||||||||| ||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  22014024 cctcttgac--------gacattgaaattctg--atagtcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 22014113  T
Q  385 tttattatatttttatatggttact 409  Q
    ||||||||||||||||| |||||||    
T  22014114 tttattatatttttatacggttact 22014138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 193 - 299
Target Start/End: Original strand, 33062984 - 33063090
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33062984 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33063083  T
Q  293 caacatt 299  Q
    | |||||    
T  33063084 cgacatt 33063090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 193 - 399
Target Start/End: Original strand, 27650961 - 27651160
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    |||| ||||| || ||||| |||| || || | |||||||||||||||||   ||||||||||||  |||||||||||| ||| ||| ||||||||||      
T  27650961 gattgttatagtctatttggatttgattatttggattccttttcattatacatgatttctatatttcctttaaagttgttgatttggattcacctcttac 27651060  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttatt 390  Q
     ||         ||||| ||||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||  ||||||| ||||||||||    
T  27651061 gaa---------attgatattttgatatagtattatttgatttgataaatttacaaaattttctgaattttcatggtatactcttgattgtgaatttatt 27651151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 407
Target Start/End: Original strand, 6952290 - 6952387
Alignment:
Q  310 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggtta 407  Q
    |||||||||||| | ||||||||||||||||||| |||||| |||  |||||||||||||| |||| ||| ||| ||||||| ||||||||| |||||    
T  6952290 aattttgatatagtcttatttggtttgataaattcacaaagattttcgaattttcatggtacactttattgtgagtttattacatttttatacggtta 6952387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 33063205 - 33063277
Alignment:
Q  326 tatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 401  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||   || |||||||||||||||||||||    
T  33063205 tatttggtttgataaaattacaaagttttatgaattttcatggtacact---ttgtgaatttattatatttttata 33063277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 401
Target Start/End: Complemental strand, 15970657 - 15970459
Alignment:
Q  194 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgac 293  Q
    |||||||||||| ||||| |||| || || ||||| ||||||||||||    |||||||||||| |  |||||||||||||| ||| ||||||| |  ||    
T  15970657 atttttatattcgatttggatttgattatttcgat-ccttttcattatggatgatttctatattctaattaaagttgtggatttgggttcacctttgtac 15970559  T
Q  294 aacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattata 393  Q
            | |||||  |||||||| || | ||||||||||||||||| ||||||||||||  ||||||||| |||| ||| |||||||| || ||||||    
T  15970558 --------gacattgcgattttgatgtagtcttatttggtttgataaagttacaaagttttccgaattttcaaggtacactagattatgagttgattata 15970467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 369
Target Start/End: Original strand, 17355375 - 17355540
Alignment:
Q  196 ttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 294  Q
    |||||||||| ||||| |||| || || |||||||||||| |||||||  ||||| ||||||| ||||||||||||||||| ||| ||||| || | ||     
T  17355375 ttttatattctatttggatttgattatttcgattcctttttcattatacgcgatt-ctatattttctttaaagttgtggatttgggttcacttccttac- 17355472  T
Q  295 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggt 369  Q
           | ||||| |||||| ||||| | ||||||||||||||||| |||| | |||||  |||||||||||||    
T  17355473 -------gacattggaattttaatatacttttatttggtttgataaagttacgatgttttccgaattttcatggt 17355540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 27684088 - 27684185
Alignment:
Q  304 cattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 401  Q
    ||||| |||||| ||||| | |||||||||||||| || |||| | |||||  |||||||||||| | ||| |||| ||| ||||| |||||||||||    
T  27684088 cattggaattttaatatacttttatttggtttgattaagttacgatgttttccgaattttcatggcacactcgattgtgagtttatcatatttttata 27684185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 27691407 - 27691504
Alignment:
Q  304 cattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 401  Q
    ||||| |||||| ||||| | |||||||||||||| || |||  | |||||  |||||||||||| | ||| |||| ||| ||||| |||||||||||    
T  27691407 cattggaattttaatatacttttatttggtttgattaagttaagatgttttccgaattttcatggcacactcgattgtgagtttatcatatttttata 27691504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 185 - 409
Target Start/End: Complemental strand, 5519712 - 5519498
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 284  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  5519712 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 5519613  T
Q  285 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 384  Q
    ||||||||         | |||||||||| ||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  5519612 cctcttga--------agacattgaaattctg--atagtcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 5519523  T
Q  385 tttattatatttttatatggttact 409  Q
    ||||||||||||||||| |||||||    
T  5519522 tttattatatttttatacggttact 5519498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 195 - 409
Target Start/End: Original strand, 42785455 - 42785658
Alignment:
Q  195 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 294  Q
    ||||||||||  ||||| |||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||     
T  42785455 tttttatattttatttggatttgattatctcgattcattttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgac- 42785553  T
Q  295 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 394  Q
           | ||||||||||  |  ||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||| || | || ||||||    
T  42785554 -------gacattgaaattccg--atagtcttgtttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtg-agttgttatat 42785643  T
Q  395 ttttatatggttact 409  Q
    ||||||| |||||||    
T  42785644 ttttatacggttact 42785658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 372
Target Start/End: Original strand, 15598659 - 15598829
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || || ||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| |||||||||| |    
T  15598659 gatttttatattctatttggatttgattatttcgattccttt-cattatacgcgatttctatattttctttaaagttgtggatttggattcacctcttta 15598757  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata 372  Q
    |        | |||||| ||||||||||| | |||||| |||||||||||||| || |||||||||||||||||| ||||    
T  15598758 c--------gacattgagattttgatatagtcttatttcgtttgataaatttaaaaggttttatgaattttcatgttata 15598829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 27198431 - 27198374
Alignment:
Q  310 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatg 367  Q
    |||||||||||| |  |||||||||| |||||||||||||||||| ||||||||||||    
T  27198431 aattttgatatagtcatatttggtttaataaatttacaaagttttctgaattttcatg 27198374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 193 - 401
Target Start/End: Complemental strand, 4763727 - 4763524
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  4763727 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 4763628  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    | ||     | |||||||||| |||||||   ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||  |||||||||||    
T  4763627 cgac-----gacattgaaattctgatatagccttatttggtttgataaaattaccaagttttatgaattttcatggtacacttgattgcgaatttattat 4763533  T
Q  393 atttttata 401  Q
    |||||||||    
T  4763532 atttttata 4763524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 246 - 401
Target Start/End: Complemental strand, 27561317 - 27561170
Alignment:
Q  246 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 345  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||        |||||||||||||| | ||||||||||||||||| |||    
T  27561317 gatttatatattttctttaaagttgtggatttggtttcacctcttgacgacatt--------gaaattttgatatagtcttatttggtttgataaaatta 27561226  T
Q  346 caaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 401  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  27561225 caaagttttatgaattttcatggtacacttgattgtgaatttattatatttttata 27561170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 311 - 401
Target Start/End: Complemental strand, 11512925 - 11512835
Alignment:
Q  311 attttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 401  Q
    ||||||| ||| | ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||    
T  11512925 attttgacatagtcttatttggtttgataaagttacaaagttttccgaattttcatggtatacttgattgtgagtttattatatttttata 11512835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 27561397 - 27561332
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgattt 250  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  27561397 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgattt 27561332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 407
Target Start/End: Complemental strand, 8164542 - 8164473
Alignment:
Q  336 gataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggtta 407  Q
    |||||| |||||||  ||| ||||||||||||||| |||||||| | ||||||||||||||||||| |||||    
T  8164542 gataaaattacaaa--tttgtgaattttcatggtacacttgattgtaaatttattatatttttatacggtta 8164473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 5358722 - 5358666
Alignment:
Q  312 ttttgatataatattatttggtttgataaatttacaaagttttatgaattttcatgg 368  Q
    |||||||||| | || |||||||| ||||||||| |||||||||||| |||||||||    
T  5358722 ttttgatatagtcttgtttggtttaataaatttataaagttttatgagttttcatgg 5358666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 11513039 - 11512948
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 285  Q
    ||||||||||||| ||||| |||| || || ||||||||||||||||||    ||||| | |||| ||||||||||||||||| ||| |||||    
T  11513039 gatttttatattctatttggatttgattatttcgattccttttcattatgcatgattt-tttattttctttaaagttgtggatttgggttcac 11512948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 5358824 - 5358734
Alignment:
Q  195 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 285  Q
    ||||||||||| ||||| |||| || || |  ||||||| |||||||| || |||||||||||  ||||||||| || ||| |||||||||    
T  5358824 tttttatattctatttggatttgattattttcattccttctcattatactctatttctatatttgctttaaagtggtagatttggtttcac 5358734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 40383358 - 40383404
Alignment:
Q  94 aacatgacagatattttgcaacatgagatattaaatttggctttcaa 140  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  40383358 aacatgagagatatttttcaatatgagatatttaatttggctttcaa 40383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 54352078 - 54351969
Alignment:
Q  246 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 345  Q
    |||||||||| |||||||||| |||||||| ||||||||||| ||       ||  |  |||| |||||||||||  | ||||||||||| |||||||||    
T  54352078 gatttctatactatctttaaaattgtggatttggtttcacctttt-------ttacgatattggaattttgatatggtcttatttggtttaataaattta 54351986  T
Q  346 caaagttttatgaattt 362  Q
    || |||||| |||||||    
T  54351985 cacagttttctgaattt 54351969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 185 - 409
Target Start/End: Original strand, 44324032 - 44324246
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 284  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  44324032 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 44324131  T
Q  285 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 384  Q
    |||||||||        | |||||||||| ||  ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  44324132 cctcttgac--------gacattgaaattctg--atagtcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 44324221  T
Q  385 tttattatatttttatatggttact 409  Q
    ||||||||||||||||| |||||||    
T  44324222 tttattatatttttatacggttact 44324246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 246 - 401
Target Start/End: Original strand, 45332676 - 45332823
Alignment:
Q  246 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 345  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||        |||||||||||||| | ||||||||||||||||| |||    
T  45332676 gatttatatattttctttaaagttgtggatttggtttcacctcttgacgacatt--------gaaattttgatatagtcttatttggtttgataaaatta 45332767  T
Q  346 caaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 401  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  45332768 caaagttttatgaattttcatggtacacttgattgtgaatttattatatttttata 45332823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 2588117 - 2588198
Alignment:
Q  194 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggat 275  Q
    |||||||||||| ||||| |||| || |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  2588117 atttttatattctatttggatttgattatcttgattccttttcattataatcgatttatatattttctttaaagttgtggat 2588198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 808909 - 808810
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 284  Q
    ||||||| || |||||||||| ||||| |||| || |||||||||| |||||||||||  || |||||||||| |||||||| |||||||| ||| ||||    
T  808909 ttaagtccgacttttatattctatttggatttgattatctcgattctttttcattatacgcggtttctatattttctttaaaattgtggatttgggttca 808810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 45331962 - 45332019
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgattt 250  Q
    ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  45331962 gatttttatattctatttggatttgattatctcgattccttttcattataatcgattt 45332019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 401
Target Start/End: Original strand, 31713836 - 31714032
Alignment:
Q  196 ttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 294  Q
    |||||||||| ||||| |||| || || |||||||||||| |||||||  ||||| ||||||| ||||||| ||||||||| ||| ||||| || | |||    
T  31713836 ttttatattctatttggatttgattatttcgattcctttttcattatacgcgatt-ctatattttctttaa-gttgtggatttgggttcacttccttaca 31713933  T
Q  295 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 394  Q
    |||||        | |||||| ||||| | |||||||||||||| || |||| | |||||  |||||||||||| | ||| |||| ||| ||||| ||||    
T  31713934 acatt--------ggaattttaatatacttttatttggtttgattaagttacgatgttttccgaattttcatggcacactcgattgtgagtttatcatat 31714025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 193 - 409
Target Start/End: Original strand, 18982382 - 18982589
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| ||| || ||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||    
T  18982382 gatttttatattctattgga-tttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggattgggtttcacctcttga 18982480  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    | |||||        |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||| |||||||    
T  18982481 cgacatt--------gaaattttgacatagtcttatttggtttgataaaattacaaagttttatgaatttccatggtacacttgattgtgaacttattat 18982572  T
Q  393 atttttatatggttact 409  Q
    |||||||||| ||||||    
T  18982573 atttttatatagttact 18982589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 195 - 409
Target Start/End: Complemental strand, 4706877 - 4706677
Alignment:
Q  195 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 294  Q
    ||||||||||  ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  4706877 tttttatattttatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgaca 4706778  T
Q  295 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 394  Q
    |        |||||||||     |||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||| || | || ||||||    
T  4706777 a--------cattgaaat-----tatagtcttgtttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtg-agttgttatat 4706692  T
Q  395 ttttatatggttact 409  Q
    ||||||| |||||||    
T  4706691 ttttatacggttact 4706677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 398
Target Start/End: Complemental strand, 26340602 - 26340512
Alignment:
Q  310 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttattatattttt 398  Q
    |||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||||||||    
T  26340602 aattttgatatattcttatttgatttgataaatttacaaagttttctgaattttcatggtatactcttgattgtgagtttattatattttt 26340512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 401
Target Start/End: Complemental strand, 28603234 - 28603144
Alignment:
Q  311 attttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 401  Q
    ||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||||| | |||||  ||| ||||| |||||||||||    
T  28603234 attttgatatacttttatttggtttgataaagttacaaagttttctgaattttcatggtacatttgatcgtgagtttatcatatttttata 28603144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 26917567 - 26917464
Alignment:
Q  197 tttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaa 295  Q
    ||||||||| ||||| |||| || || |||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| ||||| |||| || |    
T  26917567 tttatattctatttggatttgattatttcgattcctttttcattatacgcgatttctatattttctttaaagttgtggatttgggttcacttctttacga 26917468  T
Q  296 catt 299  Q
    ||||    
T  26917467 catt 26917464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 15924891 - 15924982
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggat 275  Q
    ||||||| |||||||| |||| ||||| |||| || || |||||||||||| || ||||  ||||||||||||| |||||||| ||||||||    
T  15924891 ttaagtccgatttttacattctatttggatttgattatttcgattcctttttcactatatgcgatttctatattttctttaaaattgtggat 15924982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 15925033 - 15925107
Alignment:
Q  333 tttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggtta 407  Q
    ||||||||||||| |||| ||| ||||||||||  ||| ||||| ||  || ||||||||||||||||| |||||    
T  15925033 tttgataaatttataaagatttctgaattttcacagtacacttgtttgagagtttattatatttttatacggtta 15925107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 193 - 401
Target Start/End: Original strand, 3615 - 3812
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 292  Q
    ||||||||||||| || ||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||    
T  3615 gatttttatattctatgtgaatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttagtttcacctcttga 3714  T
Q  293 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 392  Q
    |        | |||||||||||    ||| | ||||||||||||||||| |||| ||||||||||||||||||||||| | |||||| ||||||||||||    
T  3715 c--------gacattgaaattt---gatagtcttatttggtttgataaaattacgaagttttatgaattttcatggtacatttgattgtgaatttattat 3803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 195 - 399
Target Start/End: Complemental strand, 7884 - 7687
Alignment:
Q  195 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 294  Q
    |||| |||||| ||||| |||| || || ||||||| ||||||| |||  |  |||||||||| ||||||||||||| ||| ||| ||||||||||  ||    
T  7884 ttttcatattctatttggatttgattatttcgattcattttcatcatacccagtttctatattttctttaaagttgttgatttggattcacctcttacca 7785  T
Q  295 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttattat 392  Q
             ||||| |||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||    
T  7784 ---------cattggaattttgatatattcttatttgatttgataaatttacaaagttttctgaattttcatggtatattcttgattgtgagtttattat 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 398
Target Start/End: Complemental strand, 10763 - 10673
Alignment:
Q  310 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttattatattttt 398  Q
    |||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||||||||    
T  10763 aattttgatatattcttatttgatttgataaatttacaaagttttctgaattttcatggtatactcttgattgtgagtttattatattttt 10673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 36264365 - 36264288
Alignment:
Q  311 attttgatataatattatttggtttgataaatttacaaagttttatgaattttcatg-gtatacttgattatgaattt 387  Q
    |||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||  || |||||||| |||||||    
T  36264365 atttcgatataatcttatttggtttgataaatttataaagttttctgaattttcatgtatacacttgattgtgaattt 36264288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 28803513 - 28803613
Alignment:
Q  185 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttc 283  Q
    |||||||  ||||||||| || ||||| |||| || || |||||||||||| |||||||  ||||||||||||| |||||||| |||||||| ||| |||    
T  28803513 ttaagtccaatttttatactctatttggatttgattatttcgattcctttttcattatatgcgatttctatattctctttaaaattgtggatttgggttc 28803612  T
Q  284 a 284  Q
    |    
T  28803613 a 28803613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 405
Target Start/End: Complemental strand, 29467106 - 29467028
Alignment:
Q  325 ttatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggt 405  Q
    ||||||| || |||||||||| |||  ||||||||||| ||||||| |||||||| |  |||||||| ||||||| |||||    
T  29467106 ttatttgattggataaatttataaa--tttatgaatttccatggtacacttgattgttgatttattaaatttttacatggt 29467028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 28803653 - 28803721
Alignment:
Q  333 tttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttata 401  Q
    ||||||||||||| |||| ||| |||||||||| |||  ||||| ||  || |||||||||||||||||    
T  28803653 tttgataaatttataaagatttctgaattttcacggtgcacttgtttgggagtttattatatttttata 28803721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 401
Target Start/End: Original strand, 60505 - 60708
Alignment:
Q  193 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttg- 291  Q
    |||| |||||||| ||||| |||| || || ||||||||||||||||||  | |||||| ||||| |||||||||||| |||| ||| ||||||| ||      
T  60505 gattgttatattctatttggatttgattatttcgattccttttcattatgcttgatttcgatattttctttaaagttgcggatttggattcacctttttt 60604  T
Q  292 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaag--ttttatgaattttcatggtatacttgattatgaatttat 389  Q
    || |||||| ||       ||||||||||| | |||||||||||||||||  ||| |||  ||||| |||||||||||  | |||||||  ||| |||||    
T  60605 acgacattt-gt-------attttgatatagtcttatttggtttgataaaactaccaagttttttacgaattttcatgagacacttgatcgtgagtttat 60696  T
Q  390 tatatttttata 401  Q
     |||||||||||    
T  60697 aatatttttata 60708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University