View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15536_low_8 (Length: 399)
Name: NF15536_low_8
Description: NF15536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15536_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 375
Target Start/End: Original strand, 52910185 - 52910532
Alignment:
| Q |
23 |
gtatataatattggtaccattatggtacacaagtgttgtccctttctttgnnnnnnnnnnnggtagtgacgagagacggcttctagtgcgagcaaaacca |
122 |
Q |
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| T |
52910185 |
gtatataacattggtaccattatggtacacaagtgttatcccttttttt-----tttttttggtagtgacgagagacggcttctagtgcgagcaaaacca |
52910279 |
T |
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| Q |
123 |
attatattgcgcaagtttaaaactaaaggatgtgtaaatatcattttaataggctttaaaggagataaatgtaacttttcctacgttatgatgaatttat |
222 |
Q |
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| T |
52910280 |
attatattgtgcaagtttaaaactaaaggatgtgtaaatatcattttaataggctttaaaggagataaatgtaacttttcctacgttatgatgaatttat |
52910379 |
T |
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| Q |
223 |
gtagaattttgtttttgaaacttctaaatatatttcaaaaaagaatgaaaggaacgcatggaaacgatgcttcagtctttgaaagtattatgaaactaaa |
322 |
Q |
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| T |
52910380 |
gtagaattttgtttttgaaacttctaaatatatttcaaaaaagaatgaaaggaacgcatggaaacgatgcttcagtctttgaaagtattatgaaactaaa |
52910479 |
T |
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| Q |
323 |
gggagaaatgatttgaaatgaagaaactaaagagagaaatggaaagcattgta |
375 |
Q |
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| T |
52910480 |
gggagaaatgatttgaaatgaagaaactaaagagagaaatggaaagcattgta |
52910532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 399
Target Start/End: Complemental strand, 52910561 - 52910532
Alignment:
| Q |
370 |
attgtaacatttgattcattgaaaaataat |
399 |
Q |
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| T |
52910561 |
attgtaacatttgattcattgaaaaataat |
52910532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 41096208 - 41096241
Alignment:
| Q |
26 |
tataatattggtaccattatggtacacaagtgtt |
59 |
Q |
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| T |
41096208 |
tataacattggtaccattatggtacacaagtgtt |
41096241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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