View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15537_high_2 (Length: 495)
Name: NF15537_high_2
Description: NF15537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15537_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 16960222 - 16960689
Alignment:
| Q |
18 |
agaaataagggggaaaatgcaggtgaagattacatttatcagcagcttttgttgtttgtcatccaataataatttgttgttgctgaatacgcaaattata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16960222 |
agaaataagggggaaaatgcaggtgaagattacatttatcagcagcttttgttgtttgtcatccaataataatttgttgttgctgaatatgcaaattata |
16960321 |
T |
|
| Q |
118 |
tttggtttggactatcaataatcatttgctatctgttgctatcaataataattttatgcactacgtgtataatttctcacctatatttttatgttatgat |
217 |
Q |
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| T |
16960322 |
tttggtttggactatcaataatcatttgctatctgttgctatcaataataattttatgtactacgtgtataatttctcacctatatttttatgttatgat |
16960421 |
T |
|
| Q |
218 |
cagaagctgaaagataatatactagccggtggaggtcaaagttctgtcatgtggtaatttgagttggactatgtaacaacagttatgcaggacgtttagt |
317 |
Q |
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| T |
16960422 |
cagaagctgaaagataatatactagccggtggaggtcaaagttctgtcatgtggtaatttgagttggactatgtaacaacagttatgcaggacgtttagt |
16960521 |
T |
|
| Q |
318 |
ttatttttagtcagggtgttgtaaatatatataattcaagtggatgacatctcaatcaccagattttttattagtgcactctaaaggataatttttccta |
417 |
Q |
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| T |
16960522 |
ttatttttagtcagggtgttgtaaatatatataattcaagtggatgacatctcaatcaccagattttttattagtgcactctaaaggataatttttccta |
16960621 |
T |
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| Q |
418 |
tattggatttgttaatttacacacgtaaaaacattattgtaagtcacttgaaattaaaggataatttt |
485 |
Q |
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| T |
16960622 |
tattggatttgttaatttacacacttaaaaacattattgtaagtcacttgaaattaaaggataatttt |
16960689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 16957601 - 16957717
Alignment:
| Q |
18 |
agaaataagggggaaaatgcaggtgaagattacatttatcagcagcttttgttgtttgtcatccaataataatttgttgttgctgaatacgcaaattata |
117 |
Q |
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||||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||| |
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| T |
16957601 |
agaaaaaagggggaaaatacaggtgaagattatatttatcagaagcttttgttgtttgtcatccagtaataatttcttgtttatgaatatgcaaattata |
16957700 |
T |
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| Q |
118 |
tttggtttggactatca |
134 |
Q |
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|||||||| ||||||| |
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| T |
16957701 |
tttggtttaaactatca |
16957717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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