View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15537_low_1 (Length: 602)
Name: NF15537_low_1
Description: NF15537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15537_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 42274169 - 42273722
Alignment:
| Q |
17 |
tgctgggttcatatgctgattttagtgttgaatcacaacaatatgagtggcttcaattagaccttactaagattgatagggtgaagacaccttgggttat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42274169 |
tgctgggttcatatgctgattttagtgttgaatcacaacaatatgagtggcttcaattagaccttactaagattgatagggtgaagacaccttgggttat |
42274070 |
T |
|
| Q |
117 |
tacaatggttcatgcaccttggtatactactaatgaggcacatcaaggtgaaggtgaatccatgagacaagctatggaagagttgctttttaaggctcgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42274069 |
tacaatggttcatgcaccttggtatactactaatgaggcacatcaaggtgaaggtgaatccatgagacaagctatggaagagttgctttttaaggctcgt |
42273970 |
T |
|
| Q |
217 |
gttgatttggtttttgctggacatgttcatgcgtatgaacgatttgtatgtcatgtttttcactactattgttttgtttattcatatcattttgacatag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42273969 |
gttgatttggtttttgctggacatgttcatgcgtatgaacgatttgtatgtcatgtttttcactactattgttttgtttattcatatcattttgacacag |
42273870 |
T |
|
| Q |
317 |
ataaattgatatgataataattttttccggttaactgtttgaattcattgcagactcgaatttacaataacaaggctgattcatgcggtccaatgtatgt |
416 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42273869 |
ataaattgatatgataataatttttttcggttaactgtttgaattcattgcagactcgaatttacaataacaaggctgattcatgcggtccaatgtatgt |
42273770 |
T |
|
| Q |
417 |
gacaattggggatggaggaaaccgcgagggacttgcactaaggtgaag |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42273769 |
gacaattggggatggaggaaaccgcgagggacttgcactaaggtgaag |
42273722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 526 - 602
Target Start/End: Complemental strand, 42273660 - 42273584
Alignment:
| Q |
526 |
agtcaatgtaaatttcttcagggacctgaaatattattatatattgcttgctgatcataggtttaagaatcctccaa |
602 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42273660 |
agtcaatgtaaatttcttctgggacctgaaatattattatatattgcttgctgatcataggtttaagaatcctccaa |
42273584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 53 - 270
Target Start/End: Original strand, 26276129 - 26276346
Alignment:
| Q |
53 |
aacaatatgagtggcttcaattagaccttactaagattgatagggtgaagacaccttgggttattacaatggttcatgcaccttggtatactactaatga |
152 |
Q |
| |
|
|||||||| | |||||||||| ||||| |||||||||||||| || ||||||||||| ||| | |||| |||||||||||||||| ||||||||| |
|
|
| T |
26276129 |
aacaatataaatggcttcaatctgacctagctaagattgataggaagagaacaccttgggtgattgccttggtacatgcaccttggtataatactaatga |
26276228 |
T |
|
| Q |
153 |
ggcacatcaaggtgaaggtgaatccatgagacaagctatggaagagttgctttttaaggctcgtgttgatttggtttttgctggacatgttcatgcgtat |
252 |
Q |
| |
|
||||||| |||||||||||||| |||||||| || |||||||| ||||||| | ||||||||||||| ||||||||| | || ||||| ||||| || |
|
|
| T |
26276229 |
ggcacatgaaggtgaaggtgaagaaatgagacaggccatggaagaattgctttatgaggctcgtgttgacttggttttttcagggcatgtccatgcatac |
26276328 |
T |
|
| Q |
253 |
gaacgatttgtatgtcat |
270 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
26276329 |
gaacgctttgtatgtcat |
26276346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 26276597 - 26276671
Alignment:
| Q |
388 |
aaggctgattcatgcggtccaatgtatgtgacaattggggatggaggaaaccgcgagggacttgcactaaggtga |
462 |
Q |
| |
|
||||||||| |||| ||||| |||| ||||||||||| |||||||||||||| || ||||||||| ||| |||| |
|
|
| T |
26276597 |
aaggctgatccatgtggtccgttgtacgtgacaattggtgatggaggaaaccgtgaaggacttgcattaaagtga |
26276671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 40335544 - 40335502
Alignment:
| Q |
215 |
gtgttgatttggtttttgctggacatgttcatgcgtatgaacg |
257 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||||| |
|
|
| T |
40335544 |
gtgttgatttagttcttgctggacatgttcatgcttatgaacg |
40335502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University