View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15537_low_5 (Length: 303)
Name: NF15537_low_5
Description: NF15537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15537_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 49254838 - 49254538
Alignment:
| Q |
1 |
taggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaacca---ccctctgtgtctttctctaacaaacc |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
49254838 |
taggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagcaccctctctgtctttctctaacaaacc |
49254739 |
T |
|
| Q |
98 |
tttatccatattttctagcccagaaaattgaata-------------cattaatattgggatttgaatacgttggtggaagttgagattattattgaaat |
184 |
Q |
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| T |
49254738 |
tttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatattgg-atttgaatacgttggtggaagttgagattattattgaaat |
49254640 |
T |
|
| Q |
185 |
tggaataaacaatgttcagttcacatgtgatgctcgaacgaacnnnnnnnaatgtaatagtttgctccgaacacggaatgaagagaaagcatcggctaat |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49254639 |
tggaataaacaatgttcagttcacatgtgatgctcgaacgaactttttttaatgtaatagtttgctccgaacacggaatgaagagaaagcatcggctaat |
49254540 |
T |
|
| Q |
285 |
at |
286 |
Q |
| |
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|| |
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| T |
49254539 |
at |
49254538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 49267092 - 49266985
Alignment:
| Q |
9 |
gctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccaccctctgtgtctttctctaacaaacctttatccatat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||| || ||||||| |
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| T |
49267092 |
gctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcaccttctctgtctttctctaacaaacccttttccatat |
49266993 |
T |
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| Q |
109 |
tttctagc |
116 |
Q |
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|||||||| |
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| T |
49266992 |
tttctagc |
49266985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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