View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_high_14 (Length: 278)
Name: NF15538_high_14
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_high_14 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 12345968 - 12346227
Alignment:
| Q |
15 |
ttcttctatactttctatgtcattaaatttctattctcaatgtctagaccttcaaacatgagaaatttgagaatctagactaatttactgaaagtttgaa |
114 |
Q |
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| T |
12345968 |
ttcttctatactttctatgtcattaaatttctattctcattgtctagaccttcaaacatgagaaatttgagaatctagactaatttactgaaagtttgaa |
12346067 |
T |
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| Q |
115 |
gcaatttgcttcatcagtaagattgaagatatatcttagcattgcatattctgttgaatattccttttataattaagtgtataatctcttatataataga |
214 |
Q |
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| T |
12346068 |
gcaatttgcttcattagtaagattgaagatatatcttagcattgcatattctgttgaatattccttttataattaagtgtaaaatctcttatataataga |
12346167 |
T |
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| Q |
215 |
ccttccgcagtgatattaagtaacacggtttttaataaatgtctctcactctctgctgct |
274 |
Q |
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| T |
12346168 |
ccttccgtagtgatattaagtaacacggtttttaataaatgtctctcactctctgttgct |
12346227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 12336848 - 12337067
Alignment:
| Q |
15 |
ttcttctatactttcta-tgtcattaaatttctattctcaatgtctagaccttcaaacatgagaaatttgagaatctagactaatttactgaaag-tttg |
112 |
Q |
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| T |
12336848 |
ttcttctatactttcaaatgtcattaaatttctattctcactgcctagaccttcaaacgtgagaaatttgagaatctagactaatttagtgaaagttttg |
12336947 |
T |
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| Q |
113 |
aagcaatttgcttcatcagtaagattgaagatatatcttagcattgcatattctgttgaatattccttttataattaagtgtataatctcttatataata |
212 |
Q |
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| T |
12336948 |
aagtaatttacttcattagtaagattgaagctatatc--------------tct----tataatccttttataaataagtgtataatctcttatataata |
12337029 |
T |
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| Q |
213 |
gaccttccgcagtgatattaagtaacacggtttttaat |
250 |
Q |
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| T |
12337030 |
gaccttccgcggtgatattaaataacatggtttttaat |
12337067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 13469495 - 13469435
Alignment:
| Q |
160 |
atattctgttgaatattccttttataattaagtgtataatctcttatataatagaccttcc |
220 |
Q |
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| T |
13469495 |
atattatgtagaatatttcttttgtaattaagtgtataatctcttatataatagactttcc |
13469435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 13464147 - 13464105
Alignment:
| Q |
170 |
gaatattccttttataattaagtgtataatctcttatataata |
212 |
Q |
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| T |
13464147 |
gaatatttattttataattaagtgtatattctcttatataata |
13464105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 18186 - 18138
Alignment:
| Q |
170 |
gaatattccttttataattaagtgtataatctcttatataatagacctt |
218 |
Q |
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| T |
18186 |
gaatattctctttgtaattaagtgtataatctcctatataatagacctt |
18138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 13919032 - 13918976
Alignment:
| Q |
175 |
ttccttttataattaagtgtataatctcttatataatagaccttccgcagtgatatt |
231 |
Q |
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| T |
13919032 |
ttcctgttataattaagtcaataatctcctatataatagaccttccgtagtgctatt |
13918976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 22096715 - 22096660
Alignment:
| Q |
160 |
atattctgttgaatattccttttataattaagtgtataatctcttatataatagac |
215 |
Q |
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| T |
22096715 |
atattatgtagaatattccttttgtaattgagtttataatctcttatacaatagac |
22096660 |
T |
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