View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15538_high_18 (Length: 246)
Name: NF15538_high_18
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 32537088 - 32537317
Alignment:
| Q |
1 |
tattcaaattttcctaaaaatacttgttnnnnnnngttcttttaaaaaattattaaattagctacacatatttacataatcattcaagtaaatctaatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32537088 |
tattcaaattttcctaaaaatacttgtaaaaaaaagttcttttaaaaaattattaaattagctacacatatttacataatcattcaagtaaatctaatta |
32537187 |
T |
|
| Q |
101 |
ttnnnnnnngttcttaaaacatagtttaaatctaattaatgaatgtgtgtaaattgatcatagacaaattgagtgtgtggaaacaagaaggttaattcca |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32537188 |
ttaaaaagagttcttaaaacatagtttaaatctaattaatgaatgtgtgtaaattgattatagacaaattga--gtgtggaaacaagaaggttaattcca |
32537285 |
T |
|
| Q |
201 |
agaattaacaataac--tataattttccaagt |
230 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| |
|
|
| T |
32537286 |
agaattaacactaacaatataattttccaagt |
32537317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University