View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_high_6 (Length: 415)
Name: NF15538_high_6
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 43090121 - 43090505
Alignment:
| Q |
17 |
cagcttctgcaggtgaaatgttgggaggtatggtagctggattatgacacaagcctctcgaatctctctttgagaaatcttgagaaggaggatgaggaag |
116 |
Q |
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| T |
43090121 |
cagcttctgcaggtgaaatgttgggaggtatggtagctggattatgacacaagcctctcgaatctctctttgagaaatcttgagaaggaggatgaggaag |
43090220 |
T |
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| Q |
117 |
agaaggattccatttggtacttgaagaatttgagtttgaattatctctgtctttctttatcccaaacaaactcttgaaccaccttatggttctacccatt |
216 |
Q |
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| T |
43090221 |
agaaggattccatttggtacttgaagaatttgagtttgaattatctctgtctttctttatcccaaacaaactcttgaaccaccttatggttctacccatt |
43090320 |
T |
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| Q |
217 |
ggttgtagtgtttgaggacttggaagaatactagtgcaagttgaagtgtgaaaattaacctacaaaaacacaaacaagtcacagtttattaagaccaaag |
316 |
Q |
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| T |
43090321 |
ggttgtagtgtttgaggacttggaagaatactagtgcaagttgaagtgtgaaaattaacctacaaaaacacaaacaagtcacagtttattaagaccaaag |
43090420 |
T |
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| Q |
317 |
aaaatgcctcgtgaaaaactacattacatgacaaaaacacacctctggaacatggggtgaagcatggaaagcaaaatcaaacaac |
401 |
Q |
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| T |
43090421 |
aaaatgcctcgtgaaaaactacattacatgacaaaaacacacctctggaacatggggtgaagcatggaaagcaaaatcaaacaac |
43090505 |
T |
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