View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_high_9 (Length: 382)
Name: NF15538_high_9
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 71 - 366
Target Start/End: Complemental strand, 39281896 - 39281597
Alignment:
| Q |
71 |
tgaactcaattgattctcagcagcacaaaatctgctgaaacaatacatttgcttctaccatcaacgtacttgcagtctgacaaactctgacatt---tga |
167 |
Q |
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| T |
39281896 |
tgaactcaattgattctcagcagcacaaaatctgctgaaacaatacatttgcttctgccatcaacgtacttgcagtctgacaaactctgacatttactga |
39281797 |
T |
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| Q |
168 |
gaaggagcacatgattaatttattgagatttcatctgacacaaaaatttggtaaggtttt-nnnnnnnnnnttaacacaagaattcgacgccacagctct |
266 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
39281796 |
gaaggagcagatgattaatttattgagatttcatctgacacaaaaatttggtaaggttttaaaaaaaaaaattaacacaagagttcgacgccacagctct |
39281697 |
T |
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| Q |
267 |
tgcaacgtgcagttatgtatggcaagaatgaaatccttcaaaagtgatgtatctacagtgaaatttccacttaccgctatgtgaagattattgatgatgg |
366 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39281696 |
tgcaacgtgcagttatgtatggcaaaaacgaaatccttcaaaagtgatgtatctacagcaaaatttccacttaccgctatgtgaagattattgatgatgg |
39281597 |
T |
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