View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_1 (Length: 746)
Name: NF15538_low_1
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Complemental strand, 19759386 - 19758863
Alignment:
| Q |
19 |
aaatatgttgtgctaaacaacttcattagtgttt-aattcttcaataccaaaacactgaagnnnnnnnnnnnnnctttaactaagttggtagctgctctt |
117 |
Q |
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| T |
19759386 |
aaatatgttgtgctaaacaacttcattagtgttttaattcttcaataccaaaacactgaagaaaaaaaaaaa--ctttaactaagttggtagctgctctt |
19759289 |
T |
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| Q |
118 |
gcctcatggaaaaccttgtaagtgttgatctaatcttttttgtatatctttcatattctaatttgttcatgtatttatacaaaaacatatcttcttatat |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19759288 |
gcctcatggaaaaccttgtaagggttgatctaatcttttttgtatatctttcatattttaatttgttcatgtatttatacaaaaacatatcttcatatat |
19759189 |
T |
|
| Q |
218 |
gatgtttatgaaatttttgggacgtggatttaccatatgctaataagcatccaactccaccatcaactcacaaatccatgcctacgttgggcttgtttgt |
317 |
Q |
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| T |
19759188 |
gatgtttatgaaaattttgggacgtggatttaccatatgctaataagcatccaactctaccatcaactcacaaatccatgcctacgttgggcttgtttgt |
19759089 |
T |
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| Q |
318 |
aagattggatggcatgacnnnnnnnnttagaatatacgttctacatgtagacttttactattataagtggtgttttactattcatttgaaaatatgttga |
417 |
Q |
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| T |
19759088 |
aagattggatggcatgacaaaaaaaattagaatatacgttctacatgtagacttttactattatgagtggtgttttactattcatttgaaaatatgttga |
19758989 |
T |
|
| Q |
418 |
atttaacacttgatttaatgtttttattaggaaggaaataatcttcgaggatttgatcttaacaaattgcctgtagttgagtttgattattcaagcaagg |
517 |
Q |
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| T |
19758988 |
attcaacacttgatttaatgtttttattaggaaggaaataatcttacaggatttgatcttaacaaattgcctgtagttgagtttgattattcaagcaagg |
19758889 |
T |
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| Q |
518 |
aaccaaataccattcagtaaggcttc |
543 |
Q |
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| T |
19758888 |
aaccaaataccattcagtaaggcttc |
19758863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 92 - 298
Target Start/End: Complemental strand, 24139197 - 24138991
Alignment:
| Q |
92 |
ctttaactaagttggtagctgctcttgcctcatggaaaaccttgtaagtgttgatctaatcttttttgtatat-ctttcatattctaatttgttcatgta |
190 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || || |||||||| ||||||||||||||||| |
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| T |
24139197 |
ctttaattaagttgttagctgctcttgcctcatggaaaaccttgtaagtgtttatctaatctttttaatacattctttcataatctaatttgttcatgta |
24139098 |
T |
|
| Q |
191 |
tttatacaaaaacatatcttcttatatgatgtttatgaaatttttgggacgtggatttaccatatgctaataagcatccaactccaccatcaactcacaa |
290 |
Q |
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| T |
24139097 |
tttatacaaaagcatatcttcttatatgatgtctatgaaa-ttttgggacgtgggttaaccatatactaagaaacatccaactccaccatcaactcacaa |
24138999 |
T |
|
| Q |
291 |
atccatgc |
298 |
Q |
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|||||||| |
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| T |
24138998 |
atccatgc |
24138991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 605 - 730
Target Start/End: Complemental strand, 19758802 - 19758677
Alignment:
| Q |
605 |
aagtaacccattttttactttgcaggctgcccagacaatacacctttgcttctctcttagacgaagataatcattttgctgaagaacaaattcttgctga |
704 |
Q |
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| T |
19758802 |
aagtaacccattttttactttgcagggtgcccagacaatacacatttgcttctctcttagacgaagataatcattttgctgaagaacaaattcttgctga |
19758703 |
T |
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| Q |
705 |
tttgaaatttacatttcccaagtata |
730 |
Q |
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|||||||||||||||||||||||||| |
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| T |
19758702 |
tttgaaatttacatttcccaagtata |
19758677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 615 - 730
Target Start/End: Complemental strand, 24138509 - 24138394
Alignment:
| Q |
615 |
ttttttactttgcaggctgcccagacaatacacctttgcttctctcttagacgaagataatcattttgctgaagaacaaattcttgctgatttgaaattt |
714 |
Q |
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||||||||| |||||| || ||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||| |||| | |
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| T |
24138509 |
ttttttactgtgcagggtgtccaaacaatacacctttgcttctctcttggacgaagataatgattttgctgaagagcaaattctttctgatttaaaatct |
24138410 |
T |
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| Q |
715 |
acatttcccaagtata |
730 |
Q |
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| T |
24138409 |
acatttcccaagtata |
24138394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 532
Target Start/End: Complemental strand, 24138665 - 24138598
Alignment:
| Q |
465 |
aggatttgatcttaacaaattgcctgtagttgagtttgattattcaagcaaggaaccaaataccattc |
532 |
Q |
| |
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|||| |||||||||||||||| ||||||| |||||| ||| ||||||| || ||| |||||| ||||| |
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| T |
24138665 |
aggaattgatcttaacaaattccctgtagctgagttcgatgattcaagaaatgaaacaaatatcattc |
24138598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 24139258 - 24139207
Alignment:
| Q |
23 |
atgttgtgctaaacaacttcattagtgtttaattcttcaataccaaaacact |
74 |
Q |
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||||||| | |||||| | |||||||||||| |||||||||||||||||||| |
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| T |
24139258 |
atgttgtcccaaacaagtccattagtgtttacttcttcaataccaaaacact |
24139207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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