View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_10 (Length: 421)
Name: NF15538_low_10
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 37793266 - 37793675
Alignment:
| Q |
1 |
agaatccaattcttgatgacaatgaccttcattttatggatgcatacatagaga------------atttctggtcagagccatatatgattgacagttc |
88 |
Q |
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| T |
37793266 |
agaatccaattcttgatgacaatgaccttcattttatggatgcatacatagagaatttgagtgagaatttctggtcagagccatatatgattgacagttc |
37793365 |
T |
|
| Q |
89 |
acatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttca |
188 |
Q |
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| T |
37793366 |
acatttccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttca |
37793465 |
T |
|
| Q |
189 |
caaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagt |
288 |
Q |
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| T |
37793466 |
caaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagt |
37793565 |
T |
|
| Q |
289 |
gtgaacatgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaat |
388 |
Q |
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| T |
37793566 |
gtgaacatgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaat |
37793665 |
T |
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| Q |
389 |
gccatgccat |
398 |
Q |
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| T |
37793666 |
gacatgccat |
37793675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 51 - 257
Target Start/End: Original strand, 37792860 - 37793066
Alignment:
| Q |
51 |
gagaatttctggtcagagccatatatgattgacagttcacatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagt |
150 |
Q |
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| T |
37792860 |
gagaatttctggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgaga |
37792959 |
T |
|
| Q |
151 |
acaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcaca |
250 |
Q |
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| T |
37792960 |
acaatatcgatcccaatattacgagtccactatcttcacaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcaca |
37793059 |
T |
|
| Q |
251 |
tgaaaat |
257 |
Q |
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||||||| |
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| T |
37793060 |
tgaaaat |
37793066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 389
Target Start/End: Original strand, 37809559 - 37809655
Alignment:
| Q |
290 |
tgaacatgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaatg |
389 |
Q |
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||||||||||||||||||| |||| ||||||| |||| |||||||||| || | ||||||| ||||| ||||||||| ||| |||||||||||||||| |
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| T |
37809559 |
tgaacatgaatactttagtcctgtatacgatgcagaactttggagcca---tggaaaataaatcgttactgtaatgtgggggtatactcttttgaaaatg |
37809655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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