View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_12 (Length: 412)
Name: NF15538_low_12
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 37685851 - 37686060
Alignment:
| Q |
19 |
tgtagacattaataaaatattggaaaatagtaatgatgcaaacaaattttttgaatccccattgaacacaataattcaccaattattgcaaaataatatt |
118 |
Q |
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| T |
37685851 |
tgtagacattaataaaatattggaaaatagtaatgatgcaaacaaattttttgaatccccattgaacacaataattcaccaattattggaaaataatatt |
37685950 |
T |
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| Q |
119 |
gatttttattgttcctttttctagaacccatacacaaccaatgaaaacgtgcgattgcctacatacataacttttgttatttcatttggttagtaaatct |
218 |
Q |
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| T |
37685951 |
gatttttattgttcctttttctagaacccatatacaaccaatgaaaacgtgcgattgcctacatacataacttttgttatttcatttggttagtaaatct |
37686050 |
T |
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| Q |
219 |
tccaatatta |
228 |
Q |
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|||||||||| |
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| T |
37686051 |
tccaatatta |
37686060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 37686132 - 37686190
Alignment:
| Q |
246 |
gaagcacaaacttgttgtcgttgcgccaactcatgacatctttgtagtttgtcaccttt |
304 |
Q |
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| T |
37686132 |
gaagcacaaacctgttgtcgttgcgccaactcatgacatctttgtagtttgtcaccttt |
37686190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 7497880 - 7497677
Alignment:
| Q |
21 |
tagacattaataaaa-tattggaaaatagtaatgatgcaaacaaattttttgaatccccattgaacacaataattcaccaattattgcaaaataatattg |
119 |
Q |
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| T |
7497880 |
tagacattaataaaaatattggaaaatagtaatgatgcaaacaaattttttgaatccccattgaacacaataattcaccaattattg---aataatattg |
7497784 |
T |
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| Q |
120 |
atttttattgttcctttttctagaacccatacacaaccaatgaaaacgtgcgattgcctacatacataacttttgttatttcatttggttagtaaatctt |
219 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7497783 |
atttttattgttcctttttctagaacccat--acaaccaatgaaaacgtgtgattgcctgcatacataacttttgttatttcatttggttagtaaatctt |
7497686 |
T |
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| Q |
220 |
ccaatatta |
228 |
Q |
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||||||||| |
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| T |
7497685 |
ccaatatta |
7497677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 7497605 - 7497547
Alignment:
| Q |
246 |
gaagcacaaacttgttgtcgttgcgccaactcatgacatctttgtagtttgtcaccttt |
304 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7497605 |
gaagcacaaacctgttgtcgttgcgccaactcatgacatctttgtagtttgtcaccttt |
7497547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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