View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15538_low_15 (Length: 366)

Name: NF15538_low_15
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15538_low_15
NF15538_low_15
[»] chr6 (7 HSPs)
chr6 (12-238)||(32536648-32536876)
chr6 (11-129)||(15959084-15959202)
chr6 (304-355)||(32536942-32536993)
chr6 (17-101)||(14373289-14373373)
chr6 (17-56)||(11462171-11462210)
chr6 (17-101)||(20883331-20883415)
chr6 (69-101)||(21168035-21168067)
[»] chr3 (6 HSPs)
chr3 (11-129)||(26771259-26771377)
chr3 (63-112)||(17098163-17098212)
chr3 (17-56)||(19890436-19890475)
chr3 (22-101)||(48570337-48570416)
chr3 (32-101)||(40930826-40930895)
chr3 (69-101)||(34333113-34333145)
[»] chr2 (2 HSPs)
chr2 (11-129)||(17765232-17765350)
chr2 (17-112)||(15917411-15917507)
[»] chr8 (3 HSPs)
chr8 (25-120)||(34137242-34137337)
chr8 (34-95)||(41665673-41665734)
chr8 (69-101)||(32266374-32266406)
[»] chr4 (5 HSPs)
chr4 (17-101)||(2822335-2822419)
chr4 (28-114)||(11587483-11587569)
chr4 (17-101)||(20002476-20002560)
chr4 (17-99)||(23162932-23163014)
chr4 (69-101)||(15740031-15740063)
[»] chr5 (6 HSPs)
chr5 (34-101)||(19255421-19255488)
chr5 (17-101)||(18359388-18359472)
chr5 (20-98)||(26019287-26019365)
chr5 (69-101)||(8227836-8227868)
chr5 (69-101)||(23238193-23238225)
chr5 (17-45)||(27795241-27795269)
[»] chr7 (3 HSPs)
chr7 (17-56)||(25619217-25619256)
chr7 (66-101)||(37919351-37919386)
chr7 (69-101)||(11277550-11277582)
[»] chr1 (4 HSPs)
chr1 (34-101)||(6259592-6259659)
chr1 (17-107)||(47623367-47623456)
chr1 (66-94)||(4842211-4842239)
chr1 (17-101)||(51994026-51994110)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 32536648 - 32536876
Alignment:
Q  12 ataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaatagtccgaaat 111  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  32536648 ataggacccaaacacactgaagtcaaatcaaatgaaaaaaagatctttgcaattttaaacaacctgcgtaatgaataaattgcaaaaaataatccgaaat 32536747  T
Q  112 atgttgaggatgaaccccaagccaagccctcaccaatctatgcattgtgatttgatagtacatgtgt--nnnnnnnnnntttacaccatctatgcatgta 209  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||    
T  32536748 atgttgaggatcaaccccaagccaagccctcaccaatctatgcattgtgatttgatagtacatgtgtaaaaaaaaaaaaattacaccatctatgcatgta 32536847  T
Q  210 aattattttcgttcttcaacccctcattt 238  Q
    |||||||||||||||||||||||||||||    
T  32536848 aattattttcgttcttcaacccctcattt 32536876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 15959202 - 15959084
Alignment:
Q  11 cataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaatagtccgaaa 110  Q
    |||||| |||||  ||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||| |||||| ||| ||||    
T  15959202 cataggtcccaattacacttaagccaaatcaaatggaaaaaagatcttcgcgatttcaagcaacctgcgtaatgaacaaattgcgaaaaatggtctgaaa 15959103  T
Q  111 tatgttgaggatgaacccc 129  Q
    |||| ||||||||||||||    
T  15959102 tatgctgaggatgaacccc 15959084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 32536942 - 32536993
Alignment:
Q  304 tgtcgataatctaaatccataaaatatttagacgaattatatttggattaaa 355  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  32536942 tgtcgatgatctaaatccataaaatatttagacgaattatatttagattaaa 32536993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 14373373 - 14373289
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||| |||||||||||||||||||||||| || ||||  |   ||||||||| ||| || || |||||||||||||||||||    
T  14373373 acccaaaaacactgaagccaaatcaaatggaagaatgatcgacgtgatttcaaactaccagcatactgaataaattgcaaaaaat 14373289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 11462171 - 11462210
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatc 56  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  11462171 acccaaacacactgaagccaaatcaaatgaaataaagatc 11462210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 20883415 - 20883331
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||| ||||||||||||||||||||||| || |||||||  |   ||||||| | |||||| || | ||||||||||| |||||    
T  20883415 acccatacacactgaagccaaatcaaatgaaataaagatcgacgggatttcaagccacctgcatattcaataaattgcacaaaat 20883331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 21168035 - 21168067
Alignment:
Q  69 aacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||| |||||||||||||||||    
T  21168035 aacaacctgcgtaattaataaattgcaaaaaat 21168067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 26771377 - 26771259
Alignment:
Q  11 cataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaatagtccgaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| | |||| || ||||||||||||||||||||||||||||||| ||||||||    
T  26771377 cataggacccaaacacactgaagccaaatcaaatggaaaaaaaatcttcgcgattttaagcaacctgcgtaatgaataaattgcaaaaaattgtccgaaa 26771278  T
Q  111 tatgttgaggatgaacccc 129  Q
    |||| ||||||| ||||||    
T  26771277 tatgctgaggatcaacccc 26771259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 17098212 - 17098163
Alignment:
Q  63 atttcaaacaacctgcgtaatgaataaattgcaaaaaatagtccgaaata 112  Q
    ||||||||| |||||||||||||||||||||||| |||| ||| ||||||    
T  17098212 atttcaaaccacctgcgtaatgaataaattgcaagaaatggtctgaaata 17098163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 19890436 - 19890475
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatc 56  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  19890436 acccaaacacactgaagccaaatcaaatgaaataaagatc 19890475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 48570416 - 48570337
Alignment:
Q  22 aacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||||||||| ||||| | |||||  | | ||||||| | |||||| || ||||||||||||| |||||    
T  48570416 aacacactgaagccaaatcaagtggaagagagatcgacgcgatttcaagccacctgcatattgaataaattgcataaaat 48570337  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 40930895 - 40930826
Alignment:
Q  32 agccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    |||||||||||||| || ||||| | ||||  | || |||||||||| |||| |||||||||||||||||    
T  40930895 agccaaatcaaatgaaagaaagaacgtcaccctctcgaacaacctgcataattaataaattgcaaaaaat 40930826  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 34333145 - 34333113
Alignment:
Q  69 aacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||| |||||||||||||||||    
T  34333145 aacaacctgcgtaattaataaattgcaaaaaat 34333113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 17765350 - 17765232
Alignment:
Q  11 cataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaatagtccgaaa 110  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||   ||||||| ||||||||||||||||||| ||||||||||| ||| ||||    
T  17765350 cataagacccaaacacactgaagccaaatcaaatgaaaaaaagatcttcgtgatttcaagcaacctgcgtaatgaataagttgcaaaaaatggtctgaaa 17765251  T
Q  111 tatgttgaggatgaacccc 129  Q
    |||||||||||| ||||||    
T  17765250 tatgttgaggatcaacccc 17765232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 15917411 - 15917507
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaattt-caaacaacctgcgtaatgaataaattgcaaaaaatagtccgaaata 112  Q
    ||||||||||| ||||| |||| ||| ||||||||||||| || | |||| | | | |||||| |||||||||||||||||||||| ||| ||||||    
T  15917411 acccaaacacattgaagtcaaaccaagtggaaaaaagatcgtcgcgattttcgagccacctgcataatgaataaattgcaaaaaatggtctgaaata 15917507  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 34137337 - 34137242
Alignment:
Q  25 acactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgagg 120  Q
    |||||||||||||||||||||||  ||| |||| |   |||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||    
T  34137337 acactgaagccaaatcaaatggagcaaatatctacgggatttcaaacaacctgcataatgaataaattgcaaaaaatggtccaaaatatgctgagg 34137242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 41665734 - 41665673
Alignment:
Q  34 ccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgca 95  Q
    ||||||||| ||||| ||||||| || |  | |||||||||||||||||| |||||||||||    
T  41665734 ccaaatcaagtggaagaaagatcgtcgccttctcaaacaacctgcgtaattaataaattgca 41665673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 32266374 - 32266406
Alignment:
Q  69 aacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||| |||||||||||||||||    
T  32266374 aacaacctgcgtaattaataaattgcaaaaaat 32266406  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 2822419 - 2822335
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    |||||||||||||||||||||||||| ||||| |||||||  | | ||||||| | |||||| || ||||||||||||| |||||    
T  2822419 acccaaacacactgaagccaaatcaagtggaagaaagatcgacgcgatttcaagccacctgcatattgaataaattgcataaaat 2822335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 11587569 - 11587483
Alignment:
Q  28 ctgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaatagtccgaaatatg 114  Q
    |||||||||||||||||| || |||||||| |   || || | | |||||| |||||||| ||||||||||||| ||||||||||||    
T  11587569 ctgaagccaaatcaaatgaaataaagatctacgggatgtcgagctacctgcataatgaatgaattgcaaaaaatggtccgaaatatg 11587483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 20002476 - 20002560
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||||||||||||||||| || |||||||  |  |||||||| | |||| | || | ||||||||||| |||||    
T  20002476 acccaaacacactgaagccaaatcaaatgaaataaagatcgacggaatttcaagccacctacatattcaataaattgcacaaaat 20002560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 23163014 - 23162932
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaa 99  Q
    ||||||| |||||||||||||||||||||||| || ||||  |   ||||||||| ||| || |  |||||||||||||||||    
T  23163014 acccaaatacactgaagccaaatcaaatggaagaacgatcgacgtgatttcaaactaccagcatgctgaataaattgcaaaaa 23162932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 15740031 - 15740063
Alignment:
Q  69 aacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||| |||||||||||||||||    
T  15740031 aacaacctgcgtaattaataaattgcaaaaaat 15740063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 19255488 - 19255421
Alignment:
Q  34 ccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||| |||||||| |||| || |||| || ||||||||||||||| |||||||||||||||||    
T  19255488 ccaaatcaagtggaaaaatgatcgtcgcaatctcgaacaacctgcgtaattaataaattgcaaaaaat 19255421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 18359472 - 18359388
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||||||||||||||||| || |||||||  |   ||||||| | ||||||||| | ||||||||||| |||||    
T  18359472 acccaaacacactgaagccaaatcaaatgaaagaaagatcgacgagatttcaagccacctgcgtatttaataaattgcacaaaat 18359388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 26019365 - 26019287
Alignment:
Q  20 caaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaa 98  Q
    |||||||||||||||||||||||||| || |||||||  | |  ||||| | |||||||||| || |||||||||||||    
T  26019365 caaacacactgaagccaaatcaaatgaaataaagatcgacgcgctttcagaaaacctgcgtattggataaattgcaaaa 26019287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 8227836 - 8227868
Alignment:
Q  69 aacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||| |||||||||||||||||    
T  8227836 aacaacctgcgtaattaataaattgcaaaaaat 8227868  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 23238193 - 23238225
Alignment:
Q  69 aacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||| |||||||||||||||||    
T  23238193 aacaacctgcgtaattaataaattgcaaaaaat 23238225  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 27795241 - 27795269
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatg 45  Q
    |||||||||||||||||||||||||||||    
T  27795241 acccaaacacactgaagccaaatcaaatg 27795269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 25619217 - 25619256
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatc 56  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  25619217 acccaaacacactgaagccaaatcaaatgaaataaagatc 25619256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 37919351 - 37919386
Alignment:
Q  66 tcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    |||||||||||||||||| |||||||||||||||||    
T  37919351 tcaaacaacctgcgtaattaataaattgcaaaaaat 37919386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 11277582 - 11277550
Alignment:
Q  69 aacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||| |||||||||||||||||    
T  11277582 aacaacctgcgtaattaataaattgcaaaaaat 11277550  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 6259592 - 6259659
Alignment:
Q  34 ccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    ||||||||||||||||||||| | || |  | || |||||||| |||||| |||||||||||||||||    
T  6259592 ccaaatcaaatggaaaaaagaccgtctccctctcgaacaacctacgtaattaataaattgcaaaaaat 6259659  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 47623456 - 47623367
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaatagtccg 107  Q
    ||||||| |||| ||||||||||||||||||| || ||||  |   ||||||||| ||| || || ||||||||||||||||||| |||||    
T  47623456 acccaaatacac-gaagccaaatcaaatggaagaacgatcgacgtgatttcaaactaccagcatactgaataaattgcaaaaaatggtccg 47623367  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 4842211 - 4842239
Alignment:
Q  66 tcaaacaacctgcgtaatgaataaattgc 94  Q
    |||||||||||||||||||||||||||||    
T  4842211 tcaaacaacctgcgtaatgaataaattgc 4842239  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 51994110 - 51994026
Alignment:
Q  17 acccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaacaacctgcgtaatgaataaattgcaaaaaat 101  Q
    |||||||||||||||||||||||||| ||||| | |||||  | | |||||||   ||| || || ||||||||||||| |||||    
T  51994110 acccaaacacactgaagccaaatcaagtggaagagagatcgacgcgatttcaaggcaccagcatattgaataaattgcataaaat 51994026  T

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