View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_16 (Length: 309)
Name: NF15538_low_16
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 25788320 - 25788602
Alignment:
| Q |
18 |
catatctggttgttgtagttgtaccagtttcaacttcactctctttaatttgtccttttaggtaagattccacctagctttcaattagctgcaacctaaa |
117 |
Q |
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| T |
25788320 |
catatctggttgttgtagttgtatcagtttcaacttcactctctttaatttgtccttttgggtaagattccacctagctttcaattagctgcaacctaaa |
25788419 |
T |
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| Q |
118 |
agcataatat-ataggtcatggtttgattttcccaatgtaacaataaatctcaatctaattactggtactagagtcatgcattactgttaattgttaaac |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788420 |
agcataatattataggtcatggtttgattttcccaatgtaacaataaatctcaatctaattactggtactagagtcatgcattactgttaattgttaaac |
25788519 |
T |
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| Q |
217 |
aagcatattatgaatttaaacctgaatttatatctggattttggttttgaaggaaggaacttattacacttacatcaagtata |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788520 |
aagcatattatgaatttaaacctgaatttatatctggattttggttttgaaggaaggaacttattacacttacatcaagtata |
25788602 |
T |
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