View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_17 (Length: 307)
Name: NF15538_low_17
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 28273305 - 28273009
Alignment:
| Q |
11 |
cacagatagtatatgtaatatgcagtaatgtaagtgtttacgatatccacaccagtccataaagatatcttaaatgtttacaacttccatagaagcaaat |
110 |
Q |
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| T |
28273305 |
cacaaatagtatatgtaatatgcagtaatgtaagtgtttacgatatccacaccagtccataaagatatcttaaatgtttacaacttccatagaagcaaat |
28273206 |
T |
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| Q |
111 |
tctcaagccnnnnnnnacaagtacaatgaccgtaatattataatgatgtaatgcagtgacttctttatatattagtgataatcgtccaaattaaaattct |
210 |
Q |
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| T |
28273205 |
tctcaagcctttttttacaagtacaatgaccgtaatattataatgatgtaatgcagtgacttctttatatattagtgataatcgtccaaattaaaattct |
28273106 |
T |
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| Q |
211 |
tgacatgcttcagttaaaatattttcttagacacaaatattaataagttagtggttatttttattttcaaggttcgaagaatatcctatttaaaact |
307 |
Q |
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| T |
28273105 |
tgacatgcttcagttaaaatattttcttaaacacaaatattaataagttagtggttatttttattttcaaggttcgaagaatatcctatttaaaact |
28273009 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 28816249 - 28816209
Alignment:
| Q |
245 |
aaatattaataagttagtggttatttttattttcaaggttc |
285 |
Q |
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| T |
28816249 |
aaatgttaataagttagtggttatgttgattttcaaggttc |
28816209 |
T |
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