View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_18 (Length: 288)
Name: NF15538_low_18
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 49010897 - 49011149
Alignment:
| Q |
16 |
atgaactaggatttggattggagagtagagatccgataccccgcgaaacgcgttaatttagcttgaaaccaaaacgcagtgtttgaattaattgaaattg |
115 |
Q |
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| T |
49010897 |
atgaactaggatttggattggagagtagagatccgataccccgcgaaacgcgttaatttagcttgaaaccaaaacgcagtgtttgaattaattgaaattg |
49010996 |
T |
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| Q |
116 |
ctatgcttattccttcattcattccatcacccttccctctttccctatataaacaatctcttctccctccgcagccaaacattccctatcccttcttccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49010997 |
ctatgcttattccttcattcattccatcacccttccctctttccctatataaacaatctcttctccctccgcagccaaacattccctatcccttcttccc |
49011096 |
T |
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| Q |
216 |
ttctaatctcaaaaccctacccttttaattctcacccattccttcacctcaac |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49011097 |
ttctaatctcaaaaccctacccttttaattctcacccattccttcacctcaac |
49011149 |
T |
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