View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15538_low_19 (Length: 282)
Name: NF15538_low_19
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 5330862 - 5330684
Alignment:
| Q |
16 |
cattttttgtcctaaatatttttgtccttaatagtagtagcacaaaccacaaacaattaatcatttttatgatatttcttctcccaaattataagtagtt |
115 |
Q |
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| T |
5330862 |
cattttttgtcctaaatatttttgtccttaatagtagtagcacaaaccacaaacaattaatcatttttatgatatttcttctcccaaattataagtagtt |
5330763 |
T |
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| Q |
116 |
ttaattttttgttaaaaagaaagaagaatatctttaatgcaagttttgatcatttcatgcaaataggtctttactctat |
194 |
Q |
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| T |
5330762 |
ttaattttttgtcaaaaagaaagaagaatatcttttatgcaagttttgatcatttcatgcaaataggtctttaccctat |
5330684 |
T |
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Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 5348581 - 5348391
Alignment:
| Q |
16 |
cattttttgtcctaaatatttttgtccttaatagtagtagcacaaaccacaaacaattaatcatttttatgatatttcttctcccaaattataagtagtt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5348581 |
cattttttgtcctaaatatttttgtccttaatagtagtagcgcaaaacacaaacaattaatcatttttatgatatttcttctcccaaattataagtagtt |
5348482 |
T |
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| Q |
116 |
ttaatt--ttttgttaaaaagaaagaagaatatctttaatgcaagttttgatcatttcatgcaaataggtctttactctataatataggtc |
204 |
Q |
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|||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5348481 |
ttaattttttttgtcaaaaagaaagaagaatatcttttatgcaagttttgatcatttcatgcaaataggtctttaccctataatataggtc |
5348391 |
T |
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