View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15538_low_2 (Length: 672)
Name: NF15538_low_2
Description: NF15538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15538_low_2 |
 | |
|
| [»] scaffold0455 (1 HSPs) |
| |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] scaffold0038 (2 HSPs) |
| | |
|
| [»] scaffold0175 (1 HSPs) |
| | |
|
| [»] scaffold0154 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0455 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 16 - 672
Target Start/End: Original strand, 11791 - 12447
Alignment:
| Q |
16 |
atgtatgtccgggtttcgggacggggtggacaatattgaggattgtaagcatgtgttataagcatttaatcatctattgttcttcatcatatttagtaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11791 |
atgtatgtccgggtttcgggacggggtggacaatattgaggattgtaagcatgtgttataagcatttaatcatctattgttcttcatcatatttagtaga |
11890 |
T |
|
| Q |
116 |
gtttgagccttcaatagtgtttgaaggaagattttgaagatgcaaatggaagcaacgatgtaaggatgtcgagtgacagagggaagctaatctgagactc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11891 |
gtttgagccttcaatagtgtttgaaggaagattttgaagatgcaaatggaagcaacgatgtaaggatgtcgagtgacagagggaagctaatctgagactc |
11990 |
T |
|
| Q |
216 |
aaggtgaaagcaagcacttttatataaaagggatgaagaagcaaggatgtctcttcatccaataatgaaattttcgtggtttggttaaaagatcaataca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11991 |
aaggtgaaagcaagcacttttatataaaatggatgaagaagcaaggatgtctcttcatccaataatgaaattttcgtggtttggttaaaagatcaataca |
12090 |
T |
|
| Q |
316 |
tgtaatgtttttattatctgctatgcttttcttatttatctttagcagtattgatatgactaactcatgtttcactatgctcttacacacacatatacta |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12091 |
tgtaatgtttttattatctgctatgcttttcttatttatctttagtagtattgatatgactaactcatgtttcactatgctcttacacacacatatacta |
12190 |
T |
|
| Q |
416 |
tagagaacaagaagtctggtcagaatacgcttgtgcataaacccttgtgtgcgtgtaaaattcaagaaaatcaaaggttattgtatttaataaacatgtg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12191 |
tagagaacaagaagtctggtcagaatacacttgtgcataaacccttgtgtgcgtgtaaaattcaagaaaatcaaagtttattgtatttaataaacatgtg |
12290 |
T |
|
| Q |
516 |
caaaaactcaccggtcttatcaataaaaataatgtaacccacttttggggtggcatttcacatgggaaagtataaaatttttccaccatttaattaaatg |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12291 |
caaaaactcaccggtcttatcaataaaaataatgtaacccacttttggggtggcatttcacatgggaaagtataaaatttttccaccatttgattaaatg |
12390 |
T |
|
| Q |
616 |
aagaacacctacttaacatgttctctcgacactggatttattttccacaccaccaac |
672 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12391 |
aagaacacctacttaacatgttctctcaacactggatttattttccacaccaccaac |
12447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 633; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 16 - 672
Target Start/End: Original strand, 28133755 - 28134411
Alignment:
| Q |
16 |
atgtatgtccgggtttcgggacggggtggacaatattgaggattgtaagcatgtgttataagcatttaatcatctattgttcttcatcatatttagtaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28133755 |
atgtatgtccgggtttcgggacggggtggacaatattgaggattgtaagcatgtgttataagcatttaatcatctattgttcttcatcatatttagtaga |
28133854 |
T |
|
| Q |
116 |
gtttgagccttcaatagtgtttgaaggaagattttgaagatgcaaatggaagcaacgatgtaaggatgtcgagtgacagagggaagctaatctgagactc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28133855 |
gtttgagccttcaatagtgtttgaaggaagattttgaagatgcaaatggaagcaacgatgtaaggatgtcgagtgacagagggaagctaatctgagactc |
28133954 |
T |
|
| Q |
216 |
aaggtgaaagcaagcacttttatataaaagggatgaagaagcaaggatgtctcttcatccaataatgaaattttcgtggtttggttaaaagatcaataca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28133955 |
aaggtgaaagcaagcacttttatataaaatggatgaagaagcaaggatgtctcttcatccaataatgaaattttcgtggtttggttaaaagatcaataca |
28134054 |
T |
|
| Q |
316 |
tgtaatgtttttattatctgctatgcttttcttatttatctttagcagtattgatatgactaactcatgtttcactatgctcttacacacacatatacta |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28134055 |
tgtaatgtttttattatctgctatgcttttcttatttatctttagtagtattgatatgactaactcatgtttcactatgctcttacacacacatatacta |
28134154 |
T |
|
| Q |
416 |
tagagaacaagaagtctggtcagaatacgcttgtgcataaacccttgtgtgcgtgtaaaattcaagaaaatcaaaggttattgtatttaataaacatgtg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28134155 |
tagagaacaagaagtctggtcagaatacacttgtgcataaacccttgtgtgcgtgtaaaattcaagaaaatcaaagtttattgtatttaataaacatgtg |
28134254 |
T |
|
| Q |
516 |
caaaaactcaccggtcttatcaataaaaataatgtaacccacttttggggtggcatttcacatgggaaagtataaaatttttccaccatttaattaaatg |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28134255 |
caaaaactcaccggtcttatcaataaaaataatgtaacccacttttggggtggcatttcacatgggaaagtataaaatttttccaccatttgattaaatg |
28134354 |
T |
|
| Q |
616 |
aagaacacctacttaacatgttctctcgacactggatttattttccacaccaccaac |
672 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28134355 |
aagaacacctacttaacatgttctctcaacactggatttattttccacaccaccaac |
28134411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 52 - 257
Target Start/End: Original strand, 28220759 - 28220968
Alignment:
| Q |
52 |
tgaggattgtaagcatgtgttataagcatttaatcatctattgttcttcatcatatttagtagagtttgagccttcaatagtgtttgaaggaagattttg |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
28220759 |
tgaggattgtaagcatgttttataagcatttaatcgtccattgttcttcatcatatttagcagagtttgagcaatcaatacagtttgaaggaagattttg |
28220858 |
T |
|
| Q |
152 |
aagatgcaaatggaagcaacgatgtaagga--tgtcgagtgacagagggaagctaatctgagactcaaggtgaaagcaagcacttt--tatataaaaggg |
247 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||| ||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
28220859 |
aagatgcaaatggaagcaacgatttcaggatgtgtctagtgacagattgaagctaatctgagaatcaaggtgaaagcaaacacttttatatataaaaggg |
28220958 |
T |
|
| Q |
248 |
atgaagaagc |
257 |
Q |
| |
|
|||||||||| |
|
|
| T |
28220959 |
atgaagaagc |
28220968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 28220968 - 28221020
Alignment:
| Q |
274 |
ccaataatgaaattttcgtggtttggttaaaagatcaatacatgtaatgtttt |
326 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| || |||||||||| |
|
|
| T |
28220968 |
ccaataatgaaattgttgtggtttggttaaaagatcaatgcaggtaatgtttt |
28221020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 604
Target Start/End: Original strand, 18246177 - 18246217
Alignment:
| Q |
564 |
ggtggcatttcacatgggaaagtataaaatttttccaccat |
604 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
18246177 |
ggtggcatttcacatgggaaggtataaaactttcccaccat |
18246217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 604
Target Start/End: Complemental strand, 32079839 - 32079799
Alignment:
| Q |
564 |
ggtggcatttcacatgggaaagtataaaatttttccaccat |
604 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
32079839 |
ggtggcatttcacatgggaaagtctaaaactttcccaccat |
32079799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 128; Significance: 8e-66; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 52 - 257
Target Start/End: Original strand, 21257 - 21466
Alignment:
| Q |
52 |
tgaggattgtaagcatgtgttataagcatttaatcatctattgttcttcatcatatttagtagagtttgagccttcaatagtgtttgaaggaagattttg |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
21257 |
tgaggattgtaagcatgttttataagcatttaatcgtccattgttcttcatcatatttagcagagtttgagcaatcaatacagtttgaaggaagattttg |
21356 |
T |
|
| Q |
152 |
aagatgcaaatggaagcaacgatgtaagga--tgtcgagtgacagagggaagctaatctgagactcaaggtgaaagcaagcacttt--tatataaaaggg |
247 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||| ||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
21357 |
aagatgcaaatggaagcaacgatttcaggatgtgtctagtgacagattgaagctaatctgagaatcaaggtgaaagcaaacacttttatatataaaaggg |
21456 |
T |
|
| Q |
248 |
atgaagaagc |
257 |
Q |
| |
|
|||||||||| |
|
|
| T |
21457 |
atgaagaagc |
21466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 21466 - 21518
Alignment:
| Q |
274 |
ccaataatgaaattttcgtggtttggttaaaagatcaatacatgtaatgtttt |
326 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| || |||||||||| |
|
|
| T |
21466 |
ccaataatgaaattgttgtggtttggttaaaagatcaatgcaggtaatgtttt |
21518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 9816710 - 9816813
Alignment:
| Q |
318 |
taatgtttttattatctgctatgcttttcttatttatctttagcagtattgatatgactaactcatgtttcactatgctcttacacacacatatactata |
417 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||| | ||||| ||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
9816710 |
taatgtttttattatcttctatgcttgccttatttatctttagtaatattggcatgactaactcatgttttactatgcttttacatgcacatatactatt |
9816809 |
T |
|
| Q |
418 |
gaga |
421 |
Q |
| |
|
|||| |
|
|
| T |
9816810 |
gaga |
9816813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 9816077 - 9816270
Alignment:
| Q |
49 |
tattgaggattgtaagcatgtgtta-----taagcatttaatcatctattgttcttcatcatatttagtagagtttgagccttcaatagtg--tttgaag |
141 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||||||||| | | |||||| |||| | ||||| ||| ||||| | |||||||| | |||| || |
|
|
| T |
9816077 |
tattgaggattgtaagcctgtgttaaaatctaagtatttaatcaaccaatgttctccatcctctttagaagattttgaactttcaatagggagtttggag |
9816176 |
T |
|
| Q |
142 |
gaagattttgaagatgcaaatggaagcaacgatgtaaggatgtcgagtgacagagggaagctaatctgagactcaaggtgaaagcaagcactttt |
236 |
Q |
| |
|
||||||| ||||||||||||| ||||||| || | |||||| | |||||||| | | | |||||||||||||||||||||||| ||||||| |
|
|
| T |
9816177 |
gaagattctgaagatgcaaatcgaagcaaagaagcaaggatttatggtgacaga-gtctgtttatctgagactcaaggtgaaagcaaacactttt |
9816270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 564 - 604
Target Start/End: Complemental strand, 6381615 - 6381575
Alignment:
| Q |
564 |
ggtggcatttcacatgggaaagtataaaatttttccaccat |
604 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
6381615 |
ggtggcatttcacatgggaaaggataaaacttttccaccat |
6381575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 20015246 - 20015122
Alignment:
| Q |
74 |
taagcatttaatcatctattgttcttcatcatatttagtagagtttgagccttcaat--agtgtttgaaggaagattttgaagatgcaaatggaagcaac |
171 |
Q |
| |
|
|||||||||| ||| | ||||||||||||| | |||| ||| ||||| | ||||| || ||||| | ||| ||||||||||||||||||| ||||| |
|
|
| T |
20015246 |
taagcatttagtcaaccattgttcttcatcctctttatcagattttgaactttcaactgagagtttggaagaacattttgaagatgcaaatgggagcaag |
20015147 |
T |
|
| Q |
172 |
gatgtaaggatgtcgagtgacagag |
196 |
Q |
| |
|
|| ||||||||| | |||||||||| |
|
|
| T |
20015146 |
gaagtaaggatgactagtgacagag |
20015122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 19990890 - 19990932
Alignment:
| Q |
318 |
taatgtttttattatctgctatgcttttcttatttatctttag |
360 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
19990890 |
taatgtttttattatctcctatgcttgtgttatttatctttag |
19990932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 20007316 - 20007195
Alignment:
| Q |
75 |
aagcatttaatcatctattgttcttcatcatatttagtagagtttgagccttcaat--agtgtttgaaggaagattttgaagatgcaaatggaagcaacg |
172 |
Q |
| |
|
|||||||||| || | ||||||||||||| | ||||| ||| ||||| | |||||| || |||| | ||||||| ||||||||||||||| ||||| | |
|
|
| T |
20007316 |
aagcatttaaccaaccattgttcttcatcctctttagaagattttgaactttcaatggagagttttgaagaagattatgaagatgcaaatgggagcaaag |
20007217 |
T |
|
| Q |
173 |
atgtaaggatgtcgagtgacag |
194 |
Q |
| |
|
| | ||| ||||| |||||||| |
|
|
| T |
20007216 |
aagcaagaatgtctagtgacag |
20007195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 19952882 - 19952930
Alignment:
| Q |
320 |
atgtttttattatctgctatgcttttcttatttatctttagcagtattg |
368 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||| ||| ||||||| |
|
|
| T |
19952882 |
atgtttttattttctgctatgcttgtgttatttatctatagtagtattg |
19952930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 604
Target Start/End: Original strand, 46187148 - 46187188
Alignment:
| Q |
564 |
ggtggcatttcacatgggaaagtataaaatttttccaccat |
604 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
46187148 |
ggtggcatttcacatgggaaagtgtaaaactttcccaccat |
46187188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 604
Target Start/End: Original strand, 26262 - 26303
Alignment:
| Q |
563 |
gggtggcatttcacatgggaaagtataaaatttttccaccat |
604 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
26262 |
gggtggcatttaacatgggaaagtgtaaaacttttccaccat |
26303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 604
Target Start/End: Original strand, 27383 - 27423
Alignment:
| Q |
564 |
ggtggcatttcacatgggaaagtataaaatttttccaccat |
604 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
27383 |
ggtggcattttacatgggaaggtataaagtttttccaccat |
27423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 1718305 - 1718337
Alignment:
| Q |
132 |
gtgtttgaaggaagattttgaagatgcaaatgg |
164 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
1718305 |
gtgtttggaggaagattttgaagatgcaaatgg |
1718337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University